Mercurial > repos > climate > cds_essential_variability

diff essential_climate_variables.xml @ 2:b9d9fe0c2ce7 draft

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planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 6045302c39c9c11fb6a73966a364cc395f2f9b28
author climate
date Sun, 23 Jun 2019 11:16:11 -0400
parents 8b30be2cef81
children b261160f10ee
line wrap: on
line diff
--- a/essential_climate_variables.xml	Tue May 07 03:26:08 2019 -0400
+++ b/essential_climate_variables.xml	Sun Jun 23 11:16:11 2019 -0400
@@ -7,21 +7,27 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
        HOME=`pwd`  &&
+       source \$COPERNICUS_CDSAPIRC_KEY_FILE 2> /dev/null | true &&
        python3 '$__tool_directory__/ecv_retrieve.py'
             'ecv-for-climate-change' '$variable'
-            --year '$year'
-        #if str($time_aggregation.selector) == '1_month'
-            --month '$time_aggregation.month'
+            --month '$month'
+        #if str($product_type.product) == 'monthly_mean'
+            --year '$product_type.year'
+            --time_aggregation '1_month'
+        #else if str($product_type.product) == 'anomaly'
+            --time_aggregation '$product_type.selector'
+            --year '$product_type.year'
         #else
-            --month '01'
+            --year '2018'
+           --time_aggregation '1_month'
         #end if
-           --time_aggregation '$time_aggregation.selector'
-           --product_type '$product_type'
+           --product_type '$product_type.product'
            --format 'tgz' --output 'tmp.tgz'
            --verbose                                       &&
            tar zxvf tmp.tgz                                &&
-           cat *.grib > tmp.grib                           &&
-           cdo -f nc -t ecmwf copy tmp.grib tmp.nc
+           cat *.grib > tmpg.grib                          &&
+           cdo remapcon,$adv.resol -setgridtype,regular tmpg.grib tmp.grib &&
+           cdo -f nc -t ecmwf copy tmp.grib tmp.nc       
     ]]></command>
     <inputs>
         <param name="variable" type="select" multiple="true" label="Variable(s)">
@@ -29,78 +35,129 @@
             <option value="surface_air_relative_humidity" selected="true">Surface air relative humidity</option>
             <option value="0_7cm_volumetric_soil_moisture" selected="true">0-7cm volumetric soil moisture</option>
             <option value="precipitation" selected="true">Precipitation</option>
-            <option value="sea_ice" selected="true">Sea-ice</option>
+            <option value="sea_ice_cover" selected="true">Sea-ice cover</option>
         </param>
-        <param name="product_type" type="select" label="Select type of data">
-            <option value="climatology" selected="true">Climatology</option>
-            <option value="anomaly">Anomaly</option>
-        </param>
-        <conditional name="time_aggregation">
-            <param name="selector" type="select" label="Time aggregation">
-                <option value="12_month" selected="true">yearly</option>
-                <option value="1_month">monthly</option>
+        <conditional name="product_type">
+            <param name="product" type="select" label="Select type of data">
+                <option value="monthly_mean" selected="true">Monthly mean</option>
+                <option value="climatology">Climatology</option>
+                <option value="anomaly">Anomaly</option>
             </param>
-            <when value="1_month">
-                <param name="month" type="select" multiple="true" label="Select month(s)">
-                    <option value="01" selected="true">January</option>
-                    <option value="02" selected="true">February</option>
-                    <option value="03" selected="true">March</option>
-                    <option value="04" selected="true">April</option>
-                    <option value="05" selected="true">May</option>
-                    <option value="06" selected="true">June</option>
-                    <option value="07" selected="true">July</option>
-                    <option value="08" selected="true">August</option>
-                    <option value="09" selected="true">September</option>
-                    <option value="10" selected="true">October</option>
-                    <option value="11" selected="true">November</option>
-                    <option value="12" selected="true">December</option>
+            <when value="monthly_mean">
+                <param name="year" type="select" multiple="true"  label="Select year(s)">
+                    <option value="1979">1979</option>
+                    <option value="1980">1980</option>
+                    <option value="1981">1981</option>
+                    <option value="1982">1982</option>
+                    <option value="1983">1983</option>
+                    <option value="1984">1984</option>
+                    <option value="1985">1985</option>
+                    <option value="1986">1986</option>
+                    <option value="1987">1987</option>
+                    <option value="1988">1988</option>
+                    <option value="1989">1989</option>
+                    <option value="1990">1990</option>
+                    <option value="1991">1991</option>
+                    <option value="1992">1992</option>
+                    <option value="1993">1993</option>
+                    <option value="1994">1994</option>
+                    <option value="1995">1995</option>
+                    <option value="1996">1996</option>
+                    <option value="1997">1997</option>
+                    <option value="1998">1998</option>
+                    <option value="1999">1999</option>
+                    <option value="2000">2000</option>
+                    <option value="2001">2001</option>
+                    <option value="2002">2002</option>
+                    <option value="2003">2003</option>
+                    <option value="2004">2004</option>
+                    <option value="2005">2005</option>
+                    <option value="2006">2006</option>
+                    <option value="2007">2007</option>
+                    <option value="2008">2008</option>
+                    <option value="2009">2009</option>
+                    <option value="2010">2010</option>
+                    <option value="2011">2011</option>
+                    <option value="2012">2012</option>
+                    <option value="2013">2013</option>
+                    <option value="2014">2014</option>
+                    <option value="2015">2015</option>
+                    <option value="2016">2016</option>
+                    <option value="2017">2017</option>
+                    <option value="2018">2018</option>
+                    <option value="2019" selected="true">2019</option>
+                </param>
+            </when>
+            <when value="anomaly">
+                <param name="year" type="select" multiple="true"  label="Select year(s)">
+                    <option value="1979">1979</option>
+                    <option value="1980">1980</option>
+                    <option value="1981">1981</option>
+                    <option value="1982">1982</option>
+                    <option value="1983">1983</option>
+                    <option value="1984">1984</option>
+                    <option value="1985">1985</option>
+                    <option value="1986">1986</option>
+                    <option value="1987">1987</option>
+                    <option value="1988">1988</option>
+                    <option value="1989">1989</option>
+                    <option value="1990">1990</option>
+                    <option value="1991">1991</option>
+                    <option value="1992">1992</option>
+                    <option value="1993">1993</option>
+                    <option value="1994">1994</option>
+                    <option value="1995">1995</option>
+                    <option value="1996">1996</option>
+                    <option value="1997">1997</option>
+                    <option value="1998">1998</option>
+                    <option value="1999">1999</option>
+                    <option value="2000">2000</option>
+                    <option value="2001">2001</option>
+                    <option value="2002">2002</option>
+                    <option value="2003">2003</option>
+                    <option value="2004">2004</option>
+                    <option value="2005">2005</option>
+                    <option value="2006">2006</option>
+                    <option value="2007">2007</option>
+                    <option value="2008">2008</option>
+                    <option value="2009">2009</option>
+                    <option value="2010">2010</option>
+                    <option value="2011">2011</option>
+                    <option value="2012">2012</option>
+                    <option value="2013">2013</option>
+                    <option value="2014">2014</option>
+                    <option value="2015">2015</option>
+                    <option value="2016">2016</option>
+                    <option value="2017">2017</option>
+                    <option value="2018" selected="true">2018</option>
+                </param>
+                <param name="selector" type="select" label="Time aggregation">
+                    <option value="12_month" selected="true">yearly</option>
+                    <option value="1_month">monthly</option>
                 </param>
             </when>
         </conditional>
+        <param name="month" type="select" multiple="true" label="Select month(s)">
+            <option value="01" selected="true">January</option>
+            <option value="02" selected="true">February</option>
+            <option value="03" selected="true">March</option>
+            <option value="04" selected="true">April</option>
+            <option value="05" selected="true">May</option>
+            <option value="06" selected="true">June</option>
+            <option value="07" selected="true">July</option>
+            <option value="08" selected="true">August</option>
+            <option value="09" selected="true">September</option>
+            <option value="10" selected="true">October</option>
+            <option value="11" selected="true">November</option>
+            <option value="12" selected="true">December</option>
+        </param>
 
-        <param name="year" type="select" multiple="true"  label="Select year(s)">
-            <option value="1979">1979</option>
-            <option value="1980">1980</option>
-            <option value="1981">1981</option>
-            <option value="1982">1982</option>
-            <option value="1983">1983</option>
-            <option value="1984">1984</option>
-            <option value="1985">1985</option>
-            <option value="1986">1986</option>
-            <option value="1987">1987</option>
-            <option value="1988">1988</option>
-            <option value="1989">1989</option>
-            <option value="1990">1990</option>
-            <option value="1991">1991</option>
-            <option value="1992">1992</option>
-            <option value="1993">1993</option>
-            <option value="1994">1994</option>
-            <option value="1995">1995</option>
-            <option value="1996">1996</option>
-            <option value="1997">1997</option>
-            <option value="1998">1998</option>
-            <option value="1999">1999</option>
-            <option value="2000">2000</option>
-            <option value="2001">2001</option>
-            <option value="2002">2002</option>
-            <option value="2003">2003</option>
-            <option value="2004">2004</option>
-            <option value="2005">2005</option>
-            <option value="2006">2006</option>
-            <option value="2007">2007</option>
-            <option value="2008">2008</option>
-            <option value="2009">2009</option>
-            <option value="2010">2010</option>
-            <option value="2011">2011</option>
-            <option value="2012">2012</option>
-            <option value="2013">2013</option>
-            <option value="2014">2014</option>
-            <option value="2015">2015</option>
-            <option value="2016">2016</option>
-            <option value="2017">2017</option>
-            <option value="2018">2018</option>
-            <option value="2019" selected="true">2019</option>
-        </param>
+        <section name="adv" title="Advanced Options" expanded="false">
+            <param name="resol" type="select" label="Resolution">
+                <option value="r1440x720" selected="true">high</option>
+                <option value="r144x72">low</option>
+            </param>
+        </section>
     </inputs>
     <outputs>
         <data name="ofilename" format="netcdf" from_work_dir="tmp.nc"/>
@@ -108,17 +165,23 @@
     <tests>
         <test>
             <param name="variable" value="0_7cm_volumetric_soil_moisture"/>
-            <param name="product_type" value="climatology"/>
-            <param name="time_aggregation" value="1_month"/>
+            <conditional name="product_type">
+                <param name="product" value="monthly_mean"/>
+                <param name="year" value="2018"/>
+            </conditional>
             <param name="month" value="12"/>
-            <param name="year" value="2018"/>
+            <param name="resol" value="r144x72"/>
             <output name="ofilename" ftype="netcdf" file="soil_moisture.nc" compare="sim_size" delta="100"/>
         </test>
         <test>
-            <param name="variable" value="precipitation,sea_ice"/>
-            <param name="product_type" value="anomaly"/>
-            <param name="time_aggregation" value="12_month"/>
-            <param name="year" value="2017"/>
+            <param name="variable" value="precipitation"/>
+            <conditional name="product_type">
+                <param name="product" value="anomaly"/>
+                <param name="year" value="2017"/>
+                <param name="time_aggregation" value="12_month"/>
+            </conditional>
+            <param name="month" value="12"/>
+            <param name="resol" value="r144x72"/>
             <output name="ofilename" ftype="netcdf" file="prep_seaice.nc" compare="sim_size" delta="100"/>
         </test>
     </tests>