Mercurial > repos > climate > cds_essential_variability
view ecv_retrieve.py @ 0:5c0ab9932311 draft
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 49926d09bb7d28f07b24050d25c40f2ae875d6f7
author | climate |
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date | Fri, 03 May 2019 15:11:01 -0400 |
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children | b9d9fe0c2ce7 |
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# Retrieve Copernicus ECV # (Essential climate Variables) import argparse import os import shutil import tarfile import tempfile import warnings import cdsapi class ECV (): def __init__(self, archive, variable, product_type, year, month, time_aggregation, area, format, output, verbose=False ): self.archive = archive self.variable = variable.split(',') if product_type == '': self.product_type = 'climatology' else: self.product_type = product_type if year == '': self.year = '2019' else: self.year = year.split(',') if month == '': self.month = '01' else: self.month = month.split(',') if time_aggregation == '': self.time_aggregation = '1_month' else: self.time_aggregation = time_aggregation self.area = area if format == '': self.format = 'tgz' else: self.format = format if output == '': self.outputfile = "donwload." + self.format else: self.outputfile = output if verbose: print("archive: ", self.archive) print("variable: ", self.variable) print("year: ", self.year) print("month: ", self.month) self.cdsapi = cdsapi.Client() def retrieve(self): self.cdsapi.retrieve( self.archive, { 'variable': self.variable, 'year': self.year, 'month': self.month, 'area': self.area, 'format': self.format, 'product_type': self.product_type, 'time_aggregation': self.time_aggregation, }, self.outputfile) def checktar(self): is_grib = False with open(self.outputfile, 'rb') as ofile: is_grib = ofile.read(4) if (is_grib == b'GRIB' and self.format == 'tgz'): # we create a tgz to be consistent newfilename = tempfile.NamedTemporaryFile() gribfile = os.path.basename(newfilename.name) + '.grib' shutil.copyfile(self.outputfile, gribfile) newfilename.close() tar = tarfile.open(self.outputfile, 'w:gz') tar.add(gribfile) tar.close() if __name__ == '__main__': warnings.filterwarnings("ignore") parser = argparse.ArgumentParser() remove_apikey = False current_pwd = os.environ['HOME'] if 'GALAXY_COPERNICUS_CDSAPIRC_KEY' in os.environ and \ not os.path.isfile('.cdsapirc'): with open(".cdsapirc", "w+") as apikey: apikey.write("url: https://cds.climate.copernicus.eu/api/v2\n") apikey.write( "key: " + os.environ['GALAXY_COPERNICUS_CDSAPIRC_KEY']) remove_apikey = True parser.add_argument( 'archive', help='Archive name' ) parser.add_argument( 'variable', help='Specify which variable to retrieve' ) parser.add_argument( '--product_type', help='Type of product (climatology or anomaly)' ) parser.add_argument( '--year', help='Year(s) to retrieve.' ) parser.add_argument( '--month', help='List of months to retrieve.' ) parser.add_argument( '--time_aggregation', help='Time range over which data is aggregated (monthly/yearly).' ) parser.add_argument( '--area', help='Desired sub-area to extract (North/West/South/East)' ) parser.add_argument( '--format', help='Output file format (GRIB or netCDF or tgz)' ) parser.add_argument( '--output', help='output filename' ) parser.add_argument( "-v", "--verbose", help="switch on verbose mode", action="store_true") args = parser.parse_args() p = ECV(args.archive, args.variable, args.product_type, args.year, args.month, args.time_aggregation, args.area, args.format, args.output, args.verbose) p.retrieve() p.checktar() # remove api key file if it was created if remove_apikey and os.getcwd() == current_pwd: os.remove(os.path.join(current_pwd, '.cdsapirc'))