Mercurial > repos > climate > climate_stripes
changeset 2:abdc27e01dca draft default tip
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes commit e4c144851549600ffde5bcf875304d5edd98e2b1
| author | climate |
|---|---|
| date | Sat, 09 Jul 2022 09:02:01 +0000 |
| parents | c6f2435d680b |
| children | |
| files | climate-stripes.xml climate_stripes.py test-data/T2Mstripes_with_axis.png |
| diffstat | 3 files changed, 22 insertions(+), 12 deletions(-) [+] |
line wrap: on
line diff
--- a/climate-stripes.xml Tue Apr 14 15:08:10 2020 -0400 +++ b/climate-stripes.xml Sat Jul 09 09:02:01 2022 +0000 @@ -1,9 +1,16 @@ -<tool id="climate_stripes" name="climate stripes" version="1.0.1"> +<tool id="climate_stripes" name="climate stripes" version="1.0.2"> <description>from timeseries</description> + <edam_topics> + <edam_topic>topic_3855</edam_topic> + <edam_topic>topic_3318</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0337</edam_operation> + </edam_operations> <requirements> <requirement type="package" version="3">python</requirement> - <requirement type="package" version="3.1.1">matplotlib</requirement> - <requirement type="package" version="1.0.0">pandas</requirement> + <requirement type="package" version="3.5.2">matplotlib</requirement> + <requirement type="package" version="1.4.3">pandas</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python3 '$__tool_directory__/climate_stripes.py' @@ -21,6 +28,9 @@ #if str($adv.format_plot).strip() --format_plot '$adv.format_plot' #end if + #if $adv.nxsplit + --nxsplit '$adv.nxsplit' + #end if --output image.png ]]></command> <inputs> @@ -28,6 +38,7 @@ <param name="variable" type="text" value="global" label="column name to use for plotting" /> <param name="title" type="text" value="" label="plot title" /> <section name="adv" title="Advanced Options" expanded="false"> + <param name="nxsplit" type="integer" optional="true" label="number of values per intervals" /> <param name="xname" type="text" value="" label="column name to use for x-axis" /> <param name="format_date" type="text" value="" label="format for input date/time column" /> <param name="format_plot" type="text" value="" label="format for plotting dates on the x-axis" /> @@ -127,6 +138,7 @@ <param name="variable" value="global" /> <param name="title" value="Surface Temperature stripes (1979-2019)" /> <param name="colormap" value="OrRd" /> + <param name="nxsplit" value="50" /> <param name="xname" value="Month" /> <param name="format_date" value="XYXm" /> <param name="format_plot" value="XY" />
--- a/climate_stripes.py Tue Apr 14 15:08:10 2020 -0400 +++ b/climate_stripes.py Sat Jul 09 09:02:01 2022 +0000 @@ -72,7 +72,10 @@ self.plot_format = plot_format.replace('X', '%') def read_data(self): - self.data = pd.read_csv(self.input, sep='\t') + if self.xname is not None: + self.data = pd.read_csv(self.input, sep='\t', index_col=self.xname, infer_datetime_format=True) + else: + self.data = pd.read_csv(self.input, sep='\t') def create_stripes(self): data = np.zeros((2, self.data[self.valname].shape[0]), dtype='float') @@ -86,16 +89,11 @@ vmax=self.data[self.valname].quantile(q=0.99)) if self.title: plt.title(self.title) - if self.xname: + if self.xname is not None: nrange = self.data.index.values - n = int(np.floor((nrange.max() - nrange.min())/int(self.nxsplit))) - date_list = self.data[self.xname].loc[::n].apply( - lambda x: pd.to_datetime(str(x), - format=self.format)) + date_list = pd.to_datetime(nrange[::int(self.nxsplit)], format=self.format) date_list = [i.strftime(self.plot_format) for i in date_list] - nval = int(self.data[self.xname].loc[::n].shape[0]) - ax.xaxis.set_major_locator(plt.MaxNLocator(nval)) - ax.xaxis.set_ticklabels(date_list) + ax.set_xticks(np.arange(0, len(nrange), int(self.nxsplit)), date_list) ax.xaxis.set_tick_params(rotation=45) else: ax.set_xticks([])