Mercurial > repos > climate > ctsm_fates
diff test-data/cesm.log @ 3:efaa93ed5a79 draft default tip
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
| author | climate |
|---|---|
| date | Thu, 17 Dec 2020 14:33:35 +0000 |
| parents | b525b88bc941 |
| children |
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--- a/test-data/cesm.log Wed Oct 21 20:49:19 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,233 +0,0 @@ -nohup: ignoring input - PIO rearranger options: - comm type =p2p - comm fcd =2denable - max pend req (comp2io) = 0 - enable_hs (comp2io) = T - enable_isend (comp2io) = F - max pend req (io2comp) = 0 - enable_hs (io2comp) = F - enable_isend (io2comp) = T -(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 1) ( nthreads = 1) -(seq_comm_setcomm) init ID ( 37 IAC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) -(seq_comm_joincomm) init ID ( 38 CPLIAC ) join IDs = 2 37 ( npes = 1) ( nthreads = 1) -(seq_comm_jcommarr) init ID ( 35 ALLIACID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) -(seq_comm_joincomm) init ID ( 36 CPLALLIACID ) join IDs = 2 35 ( npes = 1) ( nthreads = 1) -(seq_comm_printcomms) 1 0 1 1 GLOBAL: -(seq_comm_printcomms) 2 0 1 1 CPL: -(seq_comm_printcomms) 3 0 1 1 ALLATMID: -(seq_comm_printcomms) 4 0 1 1 CPLALLATMID: -(seq_comm_printcomms) 5 0 1 1 ATM: -(seq_comm_printcomms) 6 0 1 1 CPLATM: -(seq_comm_printcomms) 7 0 1 1 ALLLNDID: -(seq_comm_printcomms) 8 0 1 1 CPLALLLNDID: -(seq_comm_printcomms) 9 0 1 1 LND: -(seq_comm_printcomms) 10 0 1 1 CPLLND: -(seq_comm_printcomms) 11 0 1 1 ALLICEID: -(seq_comm_printcomms) 12 0 1 1 CPLALLICEID: -(seq_comm_printcomms) 13 0 1 1 ICE: -(seq_comm_printcomms) 14 0 1 1 CPLICE: -(seq_comm_printcomms) 15 0 1 1 ALLOCNID: -(seq_comm_printcomms) 16 0 1 1 CPLALLOCNID: -(seq_comm_printcomms) 17 0 1 1 OCN: -(seq_comm_printcomms) 18 0 1 1 CPLOCN: -(seq_comm_printcomms) 19 0 1 1 ALLROFID: -(seq_comm_printcomms) 20 0 1 1 CPLALLROFID: -(seq_comm_printcomms) 21 0 1 1 ROF: -(seq_comm_printcomms) 22 0 1 1 CPLROF: -(seq_comm_printcomms) 23 0 1 1 ALLGLCID: -(seq_comm_printcomms) 24 0 1 1 CPLALLGLCID: -(seq_comm_printcomms) 25 0 1 1 GLC: -(seq_comm_printcomms) 26 0 1 1 CPLGLC: -(seq_comm_printcomms) 27 0 1 1 ALLWAVID: -(seq_comm_printcomms) 28 0 1 1 CPLALLWAVID: -(seq_comm_printcomms) 29 0 1 1 WAV: -(seq_comm_printcomms) 30 0 1 1 CPLWAV: -(seq_comm_printcomms) 31 0 1 1 ALLESPID: -(seq_comm_printcomms) 32 0 1 1 CPLALLESPID: -(seq_comm_printcomms) 33 0 1 1 ESP: -(seq_comm_printcomms) 34 0 1 1 CPLESP: -(seq_comm_printcomms) 35 0 1 1 ALLIACID: -(seq_comm_printcomms) 36 0 1 1 CPLALLIACID: -(seq_comm_printcomms) 37 0 1 1 IAC: -(seq_comm_printcomms) 38 0 1 1 CPLIAC: - (t_initf) Read in prof_inparm namelist from: drv_in - (t_initf) Using profile_disable= F - (t_initf) profile_timer= 4 - (t_initf) profile_depth_limit= 4 - (t_initf) profile_detail_limit= 2 - (t_initf) profile_barrier= F - (t_initf) profile_outpe_num= 1 - (t_initf) profile_outpe_stride= 0 - (t_initf) profile_single_file= F - (t_initf) profile_global_stats= T - (t_initf) profile_ovhd_measurement= F - (t_initf) profile_add_detail= F - (t_initf) profile_papi_enable= F - - - 1 pes participating in computation for CLM - ------------------------------------ - -NODE# NAME -( 0) galaxy-tools.novalocal - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Variable not found - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs - clmfates_interfaceMod.F90:: reading fates_mort_freezetol - clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min - clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac - clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler - clmfates_interfaceMod.F90:: reading fates_fire_crown_kill - clmfates_interfaceMod.F90:: reading fates_recruit_initd - clmfates_interfaceMod.F90:: reading fates_seed_suppl - clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry - clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn - clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept - clmfates_interfaceMod.F90:: reading fates_lf_flab - clmfates_interfaceMod.F90:: reading fates_lf_fcel - clmfates_interfaceMod.F90:: reading fates_lf_flig - clmfates_interfaceMod.F90:: reading fates_fr_flab - clmfates_interfaceMod.F90:: reading fates_fr_fcel - clmfates_interfaceMod.F90:: reading fates_fr_flig - clmfates_interfaceMod.F90:: reading fates_leaf_xl - clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index - clmfates_interfaceMod.F90:: reading fates_leaf_c3psn - clmfates_interfaceMod.F90:: reading fates_smpso - clmfates_interfaceMod.F90:: reading fates_smpsc - clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature - clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept - clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy - clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory - clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy - clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory - clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment - clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH - clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro - clmfates_interfaceMod.F90:: reading fates_hydr_p_taper - clmfates_interfaceMod.F90:: reading fates_hydr_rs2 - clmfates_interfaceMod.F90:: reading fates_hydr_srl - clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem - clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs - clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs - clmfates_interfaceMod.F90:: reading fates_mort_bmort - clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence - clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence - clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence - clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence - clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress - clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation - clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure - clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold - clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold - clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha - clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha - clmfates_interfaceMod.F90:: reading fates_leaf_tpuha - clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd - clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd - clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd - clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse - clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse - clmfates_interfaceMod.F90:: reading fates_leaf_tpuse - clmfates_interfaceMod.F90:: reading fates_seed_germination_rate - clmfates_interfaceMod.F90:: reading fates_seed_decay_rate - clmfates_interfaceMod.F90:: reading fates_trim_limit - clmfates_interfaceMod.F90:: reading fates_trim_inc - clmfates_interfaceMod.F90:: reading fates_leaf_diameter - clmfates_interfaceMod.F90:: reading fates_z0mr - clmfates_interfaceMod.F90:: reading fates_displar - clmfates_interfaceMod.F90:: reading fates_phenflush_fraction - clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold - clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction - clmfates_interfaceMod.F90:: reading fates_eca_decompmicc - clmfates_interfaceMod.F90:: reading fates_eca_km_nh4 - clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4 - clmfates_interfaceMod.F90:: reading fates_eca_km_no3 - clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3 - clmfates_interfaceMod.F90:: reading fates_eca_km_p - clmfates_interfaceMod.F90:: reading fates_eca_vmax_p - clmfates_interfaceMod.F90:: reading fates_eca_km_ptase - clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase - clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase - clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase - clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake - clmfates_interfaceMod.F90:: reading fates_prescribed_puptake - clmfates_interfaceMod.F90:: reading fates_rholvis - clmfates_interfaceMod.F90:: reading fates_rholnir - clmfates_interfaceMod.F90:: reading fates_rhosvis - clmfates_interfaceMod.F90:: reading fates_rhosnir - clmfates_interfaceMod.F90:: reading fates_taulvis - clmfates_interfaceMod.F90:: reading fates_taulnir - clmfates_interfaceMod.F90:: reading fates_tausvis - clmfates_interfaceMod.F90:: reading fates_tausnir - clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node - clmfates_interfaceMod.F90:: reading fates_hydr_p50_node - clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node - clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node - clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node - clmfates_interfaceMod.F90:: reading fates_hydr_resid_node - clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node - clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node - clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node - clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top - NetCDF: Variable not found - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Invalid dimension ID or name - NetCDF: Variable not found - NetCDF: Variable not found