Mercurial > repos > climate > ctsm_fates
view test-data/cesm.log @ 0:8c7414c07367 draft
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
| author | climate |
|---|---|
| date | Wed, 21 Oct 2020 20:30:35 +0000 |
| parents | |
| children |
line wrap: on
line source
nohup: ignoring input PIO rearranger options: comm type =p2p comm fcd =2denable max pend req (comp2io) = 0 enable_hs (comp2io) = T enable_isend (comp2io) = F max pend req (io2comp) = 0 enable_hs (io2comp) = F enable_isend (io2comp) = T (seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 1) ( nthreads = 1) (seq_comm_setcomm) init ID ( 37 IAC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) (seq_comm_joincomm) init ID ( 38 CPLIAC ) join IDs = 2 37 ( npes = 1) ( nthreads = 1) (seq_comm_jcommarr) init ID ( 35 ALLIACID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) (seq_comm_joincomm) init ID ( 36 CPLALLIACID ) join IDs = 2 35 ( npes = 1) ( nthreads = 1) (seq_comm_printcomms) 1 0 1 1 GLOBAL: (seq_comm_printcomms) 2 0 1 1 CPL: (seq_comm_printcomms) 3 0 1 1 ALLATMID: (seq_comm_printcomms) 4 0 1 1 CPLALLATMID: (seq_comm_printcomms) 5 0 1 1 ATM: (seq_comm_printcomms) 6 0 1 1 CPLATM: (seq_comm_printcomms) 7 0 1 1 ALLLNDID: (seq_comm_printcomms) 8 0 1 1 CPLALLLNDID: (seq_comm_printcomms) 9 0 1 1 LND: (seq_comm_printcomms) 10 0 1 1 CPLLND: (seq_comm_printcomms) 11 0 1 1 ALLICEID: (seq_comm_printcomms) 12 0 1 1 CPLALLICEID: (seq_comm_printcomms) 13 0 1 1 ICE: (seq_comm_printcomms) 14 0 1 1 CPLICE: (seq_comm_printcomms) 15 0 1 1 ALLOCNID: (seq_comm_printcomms) 16 0 1 1 CPLALLOCNID: (seq_comm_printcomms) 17 0 1 1 OCN: (seq_comm_printcomms) 18 0 1 1 CPLOCN: (seq_comm_printcomms) 19 0 1 1 ALLROFID: (seq_comm_printcomms) 20 0 1 1 CPLALLROFID: (seq_comm_printcomms) 21 0 1 1 ROF: (seq_comm_printcomms) 22 0 1 1 CPLROF: (seq_comm_printcomms) 23 0 1 1 ALLGLCID: (seq_comm_printcomms) 24 0 1 1 CPLALLGLCID: (seq_comm_printcomms) 25 0 1 1 GLC: (seq_comm_printcomms) 26 0 1 1 CPLGLC: (seq_comm_printcomms) 27 0 1 1 ALLWAVID: (seq_comm_printcomms) 28 0 1 1 CPLALLWAVID: (seq_comm_printcomms) 29 0 1 1 WAV: (seq_comm_printcomms) 30 0 1 1 CPLWAV: (seq_comm_printcomms) 31 0 1 1 ALLESPID: (seq_comm_printcomms) 32 0 1 1 CPLALLESPID: (seq_comm_printcomms) 33 0 1 1 ESP: (seq_comm_printcomms) 34 0 1 1 CPLESP: (seq_comm_printcomms) 35 0 1 1 ALLIACID: (seq_comm_printcomms) 36 0 1 1 CPLALLIACID: (seq_comm_printcomms) 37 0 1 1 IAC: (seq_comm_printcomms) 38 0 1 1 CPLIAC: (t_initf) Read in prof_inparm namelist from: drv_in (t_initf) Using profile_disable= F (t_initf) profile_timer= 4 (t_initf) profile_depth_limit= 4 (t_initf) profile_detail_limit= 2 (t_initf) profile_barrier= F (t_initf) profile_outpe_num= 1 (t_initf) profile_outpe_stride= 0 (t_initf) profile_single_file= F (t_initf) profile_global_stats= T (t_initf) profile_ovhd_measurement= F (t_initf) profile_add_detail= F (t_initf) profile_papi_enable= F 1 pes participating in computation for CLM ----------------------------------- NODE# NAME ( 0) galaxy-tools.novalocal NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs clmfates_interfaceMod.F90:: reading fates_mort_freezetol clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler clmfates_interfaceMod.F90:: reading fates_fire_crown_kill clmfates_interfaceMod.F90:: reading fates_recruit_initd clmfates_interfaceMod.F90:: reading fates_seed_suppl clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept clmfates_interfaceMod.F90:: reading fates_lf_flab clmfates_interfaceMod.F90:: reading fates_lf_fcel clmfates_interfaceMod.F90:: reading fates_lf_flig clmfates_interfaceMod.F90:: reading fates_fr_flab clmfates_interfaceMod.F90:: reading fates_fr_fcel clmfates_interfaceMod.F90:: reading fates_fr_flig clmfates_interfaceMod.F90:: reading fates_leaf_xl clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index clmfates_interfaceMod.F90:: reading fates_leaf_c3psn clmfates_interfaceMod.F90:: reading fates_smpso clmfates_interfaceMod.F90:: reading fates_smpsc clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro clmfates_interfaceMod.F90:: reading fates_hydr_p_taper clmfates_interfaceMod.F90:: reading fates_hydr_rs2 clmfates_interfaceMod.F90:: reading fates_hydr_srl clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs clmfates_interfaceMod.F90:: reading fates_mort_bmort clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha clmfates_interfaceMod.F90:: reading fates_leaf_tpuha clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse clmfates_interfaceMod.F90:: reading fates_leaf_tpuse clmfates_interfaceMod.F90:: reading fates_seed_germination_rate clmfates_interfaceMod.F90:: reading fates_seed_decay_rate clmfates_interfaceMod.F90:: reading fates_trim_limit clmfates_interfaceMod.F90:: reading fates_trim_inc clmfates_interfaceMod.F90:: reading fates_leaf_diameter clmfates_interfaceMod.F90:: reading fates_z0mr clmfates_interfaceMod.F90:: reading fates_displar clmfates_interfaceMod.F90:: reading fates_phenflush_fraction clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction clmfates_interfaceMod.F90:: reading fates_eca_decompmicc clmfates_interfaceMod.F90:: reading fates_eca_km_nh4 clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4 clmfates_interfaceMod.F90:: reading fates_eca_km_no3 clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3 clmfates_interfaceMod.F90:: reading fates_eca_km_p clmfates_interfaceMod.F90:: reading fates_eca_vmax_p clmfates_interfaceMod.F90:: reading fates_eca_km_ptase clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake clmfates_interfaceMod.F90:: reading fates_prescribed_puptake clmfates_interfaceMod.F90:: reading fates_rholvis clmfates_interfaceMod.F90:: reading fates_rholnir clmfates_interfaceMod.F90:: reading fates_rhosvis clmfates_interfaceMod.F90:: reading fates_rhosnir clmfates_interfaceMod.F90:: reading fates_taulvis clmfates_interfaceMod.F90:: reading fates_taulnir clmfates_interfaceMod.F90:: reading fates_tausvis clmfates_interfaceMod.F90:: reading fates_tausnir clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node clmfates_interfaceMod.F90:: reading fates_hydr_p50_node clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node clmfates_interfaceMod.F90:: reading fates_hydr_resid_node clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Variable not found