diff postprocess_csv.sh @ 0:81b0ca76435d draft default tip

"planemo upload for repository https://gitlab.com/eetun-tiimi/EODIE commit c4a5672398bc878dd2bc0bf4f3a26f59b3f6395c"
author climate
date Thu, 30 Dec 2021 15:24:09 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/postprocess_csv.sh	Thu Dec 30 15:24:09 2021 +0000
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+WORKDIR=$1
+RESDIR=$2
+
+echo "===================================================================="
+echo "               Convert EODIE csv to tabular                         " 
+echo "===================================================================="
+
+nb_csv=$(find $WORKDIR -type f -name "*.csv" | wc -l)
+echo "Number of csv file to convert: $nb_csv"
+if [[ $nb_csv -gt 0 ]]; then
+    echo "Start"
+    for infile in $WORKDIR/*.csv; do
+        echo "processing $infile"
+        sed -i.bak -e "s/,/\t/g" $infile
+        mv $infile $RESDIR/.
+    done
+fi
+
+echo "EODIE Tabular saved."