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comparison prepare_commet.xml @ 0:a6beb4d4c417

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author cmonjeau
date Fri, 05 Jun 2015 11:41:26 -0400
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1 <tool id="preparecommet" name="Prepare commet" version="1.0">
2 <description>input sets file</description>
3 <command interpreter="python">
4 prepare_commet.py
5 ${read_sets}
6 #for $set in $sets
7 ${set.reads}
8 "${set.setname}"
9 #end for
10
11 </command>
12
13 <inputs>
14 <!-- Input data files -->
15 <repeat name="sets" title="Read sets" min="1">
16 <param name="reads" type="data" multiple="true" format="fasta, fasta.gz, fastq, fastq.gz" label="Dataset"/>
17 <param name="setname" type="text" label="Set name" value="set_name"/>
18 </repeat>
19 </inputs>
20
21 <outputs>
22 <data format="commet" name="read_sets" label="read_sets : ${tool.name} on ${on_string}" />
23 </outputs>
24 <help>
25
26 **Description**
27
28 Prepare a configuration file with sets for commet tool
29
30 -------
31
32 **Created and integrated by**
33
34 Yvan Le Bras and Cyril Monjeaud
35
36 GenOuest Bio-informatics Core Facility
37
38 UMR 6074 IRISA INRIA-CNRS-UR1 Rennes (France)
39
40 support@genouest.org
41
42 If you use this tool in Galaxy, please cite :
43
44 `Y. Le Bras, A. Roult, C. Monjeaud, M. Bahin, O. Quenez, C. Heriveau, A. Bretaudeau, O. Sallou, O. Collin, Towards a Life Sciences Virtual Research Environment : an e-Science initiative in Western France. JOBIM 2013. &lt;https://www.e-biogenouest.org/resources/128&gt;`_
45
46 </help>
47
48 <citations>
49 <citation type="bibtex">@INPROCEEDINGS{JOBIM2013,
50 author = {Le Bras, Y. and ROULT, A. and Monjeaud, C. and Bahin, M. and Quenez, O. and Heriveau, C. and Bretaudeau, A. and Sallou, O. and Collin, O.},
51 title = {Towards a Life Sciences Virtual Research Environment: An e-Science initiative in Western France},
52 booktitle = {JOBIM 2013 Proceedings},
53 year = {2013},
54 url = {https://www.e-biogenouest.org/resources/128},
55 pages = {97-106}
56 }
57 </citation>
58 </citations>
59
60 </tool>
61