Mercurial > repos > cmonjeau > package_discosnp_plus_plus_2_1_7

comparison tool_dependencies.xml @ 0:4979d803970a draft default tip

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Imported from capsule None
author cmonjeau
date Mon, 06 Jul 2015 11:44:11 -0400
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-1:000000000000 0:4979d803970a
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="discoSnp_plus_plus" version="2.1.7">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://gatb-tools.gforge.inria.fr/versions/src/DiscoSNP++-2.1.7-Source.tar.gz</action>
7 <action type="shell_command">/bin/bash compile_discoSnp++.sh</action>
8
9 <!-- move directories into $INSTALL_DIR -->
10 <action type="move_directory_files">
11 <source_directory>build</source_directory>
12 <destination_directory>$INSTALL_DIR/build</destination_directory>
13 </action>
14 <action type="move_directory_files">
15 <source_directory>tools</source_directory>
16 <destination_directory>$INSTALL_DIR/tools</destination_directory>
17 </action>
18
19 <!-- move files into $INSTALL_DIR -->
20 <action type="move_file">
21 <source>run_discoSnp++.sh</source>
22 <destination>$INSTALL_DIR</destination>
23 </action>
24
25 <action type="move_file">
26 <source>run_VCF_creator.sh</source>
27 <destination>$INSTALL_DIR</destination>
28 </action>
29
30 <action type="chmod">
31 <file mode="755">$INSTALL_DIR/run_VCF_creator.sh</file>
32 </action>
33
34
35 <!-- create env.sh -->
36 <action type="set_environment">
37 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
38 </action>
39 </actions>
40 </install>
41 <readme>
42 This package installs discoSNP++ from the sources availbale in the Colib'reads web site.
43 </readme>
44 </package>
45 </tool_dependency>