Mercurial > repos > computational-metabolomics > dimspy_align_samples

comparison README.rst @ 1:c72868b80c29 draft

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"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 680116d0cf6a6d7246cba655452dea43269aeba4"
author computational-metabolomics
date Tue, 28 Apr 2020 17:44:59 -0400
parents 33b65dacd377
children 7b6f148bd99f
comparison
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0:33b65dacd377 1:c72868b80c29
1 Galaxy tool wrappers for DIMSpy 1 Galaxy tool wrappers for DIMSpy
2 ======================== 2 ===============================
3 |Build Status (Travis)| |Git| |Bioconda| |License| 3 |Build Status (Travis)| |galaxy-eu| |Git| |Bioconda| |License|
4 4
5 Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data 5 Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data
6 6
7 Source code: https://github.com/computational-metabolomics/dimspy 7 Source code: https://github.com/computational-metabolomics/dimspy
8 8
9 PyPI (The Python Package Index): https://pypi.org/project/dimspy 9 PyPI (The Python Package Index): https://pypi.org/project/dimspy
10 10
11 11
12 Version 12 Version
13 -------- 13 --------
14 v1.4.0+Galaxy0 (`DIMSpy v1.4.0 <https://pypi.org/project/dimspy/1.4.0/>`_) 14 v2.0.0+Galaxy0 (`DIMSpy v2.0.0 <https://pypi.org/project/dimspy/2.0.0/>`_)
15 15
16 16
17 Galaxy 17 Galaxy
18 ------- 18 -------
19 `Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. 19 `Galaxy <https://galaxyproject.org>`_ is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
20 20
21 21
22 Authors, contributors & Contacts 22 Credits
23 ---------------------------------- 23 -------
24 - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ 24
25 - Thomas N. Lawson (tnl495@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ 25 **Authors and contributors**
26 - Martin R. Jones (m.r.jones.1@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`_ 26 - Ralf J. M. Weber (r.j.weber@bham.ac.uk) - `University of Birmingham (UK) <https://www.birmingham.ac.uk/staff/profiles/biosciences/weber-ralf.aspx>`__
27 - Thomas N. Lawson (t.n.lawson@bham.ac.uk) - `University of Birmingham (UK) <http://www.birmingham.ac.uk/index.aspx>`__
28 - Martin R. Jones (martin.jones@eawag.ch) - `Eawag (Switzerland) <https://www.eawag.ch/en/aboutus/portrait/organisation/staff/profile/martin-jones/show/>`_
29
30
31 **DIMSpy acknowledges support from the following funders:**
32 - BBSRC, grant number BB/M019985/1
33 - European Commission's H2020 programme, grant agreement number 654241
34 - Wellcome Trust, grant number 202952/Z/16/Z
27 35
28 36
29 Bugs 37 Bugs
30 ---- 38 ----
31 Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_. 39 Please report any bugs that you find `here <https://github.com/computational-metabolomics/dimspy-galaxy/issues>`_.
34 will help you to make the PR if you are new to `git`. 42 will help you to make the PR if you are new to `git`.
35 43
36 44
37 Changes 45 Changes
38 ------- 46 -------
47 v2.0.0+galaxy0
48 - First release (Python 3-based version `DIMSpy <https://pypi.org/project/dimspy/2.0.0/>`_)
49
39 v1.4.0+galaxy0 50 v1.4.0+galaxy0
40 - First stable release
41 - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_) 51 - Final release (Python 2-based version `DIMSpy <https://pypi.org/project/dimspy/1.4.0/>`_)
42 52
43 53
44 Licenses 54 Licenses
45 ------- 55 -------
57 :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy 67 :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy
58 68
59 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 69 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600
60 :target: https://github.com/computational-metabolomics/dimspy 70 :target: https://github.com/computational-metabolomics/dimspy
61 71
72 .. |galaxy-eu| image:: https://img.shields.io/badge/usegalaxy-.eu-brightgreen?logo=data:image/png;base64,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
73 :target: http://usegalaxy.eu
74
62 .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 75 .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600
63 :target: http://bioconda.github.io/recipes/dimspy/README.html 76 :target: http://bioconda.github.io/recipes/dimspy/README.html
64 77
65 .. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg 78 .. |License| image:: https://img.shields.io/badge/License-GPL%20v3-blue.svg
66 :target: https://www.gnu.org/licenses/gpl-3.0.html 79 :target: https://www.gnu.org/licenses/gpl-3.0.html