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comparison process_scans.xml @ 2:bc099f2346a1 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 80069808371b58f45da0c8133c27d67ac1a5b448"
author computational-metabolomics
date Wed, 17 Feb 2021 10:57:11 +0000
parents deafa30d6570
children
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1:deafa30d6570 2:bc099f2346a1
1 <tool id="dimspy_process_scans" name="Process Scans (and SIM-Stitch)" version="@TOOL_VERSION@+galaxy@GALAXY_TOOL_VERSION@"> 1 <tool id="dimspy_process_scans" name="Process Scans (and SIM-Stitch)" version="@TOOL_VERSION@+galaxy1">
2 <description> - Read, filter and average MS scans</description> 2 <description> - Read, filter and average MS scans</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
54 --exclude-scan-events $se.start $se.end $se.scan_type 54 --exclude-scan-events $se.start $se.end $se.scan_type
55 #end if 55 #end if
56 #end for 56 #end for
57 #end if 57 #end if
58 --report '$report' 58 --report '$report'
59 --ncpu \${GALAXY_SLOTS:-1}
59 && 60 &&
60 dimspy hdf5-pls-to-txt 61 dimspy hdf5-pls-to-txt
61 --input '$hdf5_file_out' 62 --input '$hdf5_file_out'
62 --output . 63 --output .
63 --delimiter $delimiter 64 --delimiter $delimiter