Mercurial > repos > computational-metabolomics > dimspy_process_scans
changeset 2:bc099f2346a1 draft default tip
"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 80069808371b58f45da0c8133c27d67ac1a5b448"
author | computational-metabolomics |
---|---|
date | Wed, 17 Feb 2021 10:57:11 +0000 |
parents | deafa30d6570 |
children | |
files | README.rst process_scans.xml |
diffstat | 2 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- a/README.rst Tue Apr 28 17:32:59 2020 -0400 +++ b/README.rst Wed Feb 17 10:57:11 2021 +0000 @@ -1,6 +1,6 @@ Galaxy tool wrappers for DIMSpy =============================== -|Build Status (Travis)| |galaxy-eu| |Git| |Bioconda| |License| +|Build Status (last commit)| |Build Status (weekly global test)| |galaxy-eu| |Git| |Bioconda| |License| Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data @@ -63,8 +63,11 @@ section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader. -.. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/dimspy-galaxy.svg?style=flat&maxAge=3600&label=Travis-CI - :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy +.. |Build Status (last commit)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Galaxy%20Tool%20Linting%20and%20Tests%20for%20push%20and%20PR/badge.svg + :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Galaxy+Tool+Linting+and+Tests+for+push+and+PR%22 + +.. |Build Status (weekly global test)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Weekly%20global%20Tool%20Linting%20and%20Tests/badge.svg + :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Weekly+global+Tool+Linting+and+Tests%22 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 :target: https://github.com/computational-metabolomics/dimspy
--- a/process_scans.xml Tue Apr 28 17:32:59 2020 -0400 +++ b/process_scans.xml Wed Feb 17 10:57:11 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="dimspy_process_scans" name="Process Scans (and SIM-Stitch)" version="@TOOL_VERSION@+galaxy@GALAXY_TOOL_VERSION@"> +<tool id="dimspy_process_scans" name="Process Scans (and SIM-Stitch)" version="@TOOL_VERSION@+galaxy1"> <description> - Read, filter and average MS scans</description> <macros> <import>macros.xml</import> @@ -56,6 +56,7 @@ #end for #end if --report '$report' + --ncpu \${GALAXY_SLOTS:-1} && dimspy hdf5-pls-to-txt --input '$hdf5_file_out'