Mercurial > repos > computational-metabolomics > dimspy_replicate_filter
diff replicate_filter.xml @ 1:0cdf340364ed draft
"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 680116d0cf6a6d7246cba655452dea43269aeba4"
| author | computational-metabolomics |
|---|---|
| date | Tue, 28 Apr 2020 17:43:04 -0400 |
| parents | cb2acfaec200 |
| children | 6cb796aa12c8 |
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--- a/replicate_filter.xml Sat Apr 11 16:50:23 2020 -0400 +++ b/replicate_filter.xml Tue Apr 28 17:43:04 2020 -0400 @@ -63,26 +63,12 @@ </output_collection> </test> <test> - <param name="hdf5_file_in" value="pls.h5" ftype="h5"/> - <param name="filelist" value="filelist_mzml_triplicates.txt" ftype="tsv"/> - <param name="replicates" value="3"/> - <param name="min_peaks" value="2"/> - <param name="ppm" value="2.0"/> - <param name="rsd_threshold" value=""/> - <output name="hdf5_file_out" value="pls_rf.h5" ftype="h5" compare="sim_size"/> - <output name="report" value="report_pls_rf_02.txt" ftype="txt"/> - <output name="samplelist" value="samplelist_2.txt" ftype="tsv"/> - <output_collection name="peaklists_txt" type="list"> - <element name="batch04_QC17_rep01_262_2_263_3_264" file="batch04_QC17_rep01_262_2_263_3_264.txt" ftype="tsv"/> - </output_collection> - </test> - <test> <param name="hdf5_file_in" value="pls_scan5.h5" ftype="h5"/> <param name="replicates" value="3"/> <param name="min_peaks" value="2"/> <param name="ppm" value="2.0"/> <param name="rsd_threshold" value=""/> - <output name="report" value="report_pls_rf_03.txt" ftype="txt"/> + <output name="report" value="report_pls_rf_02.txt" ftype="txt"/> </test> </tests> <help> @@ -97,7 +83,7 @@ Description ----------- -Standard DIMS processing workflow: Process Scans -> **Replicate Filter** -> Align Samples -> [Missing value sample filter] -> Blank Filter -> Sample Filter -> Matrix processing -> Statistics +Standard DIMS processing workflow: Process Scans -> **[Replicate Filter]** -> Align Samples -> Blank Filter -> Sample Filter -> [Missing value sample filter] -> Pre-processing -> Statistics |