Mercurial > repos > computational-metabolomics > dimspy_replicate_filter

changeset 2:6cb796aa12c8 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 80069808371b58f45da0c8133c27d67ac1a5b448"
author computational-metabolomics
date Wed, 17 Feb 2021 10:54:32 +0000
parents 0cdf340364ed
children
files README.rst replicate_filter.xml
diffstat 2 files changed, 8 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Tue Apr 28 17:43:04 2020 -0400
+++ b/README.rst	Wed Feb 17 10:54:32 2021 +0000
@@ -1,6 +1,6 @@
 Galaxy tool wrappers for DIMSpy
 ===============================
-|Build Status (Travis)| |galaxy-eu| |Git| |Bioconda| |License|
+|Build Status (last commit)| |Build Status (weekly global test)| |galaxy-eu| |Git| |Bioconda| |License|
 
 Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data
 
@@ -63,8 +63,11 @@
 section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader.
 
 
-.. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/dimspy-galaxy.svg?style=flat&maxAge=3600&label=Travis-CI
-   :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy
+.. |Build Status (last commit)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Galaxy%20Tool%20Linting%20and%20Tests%20for%20push%20and%20PR/badge.svg
+   :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Galaxy+Tool+Linting+and+Tests+for+push+and+PR%22
+
+.. |Build Status (weekly global test)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Weekly%20global%20Tool%20Linting%20and%20Tests/badge.svg
+   :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Weekly+global+Tool+Linting+and+Tests%22
 
 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600
    :target: https://github.com/computational-metabolomics/dimspy
--- a/replicate_filter.xml	Tue Apr 28 17:43:04 2020 -0400
+++ b/replicate_filter.xml	Wed Feb 17 10:54:32 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy@GALAXY_TOOL_VERSION@">
+<tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy1">
     <description> - Remove peaks that fail to appear in at least x-out-of-n (technical) replicates</description>  
     <macros>
         <import>macros.xml</import>
@@ -19,6 +19,7 @@
             --rsd-threshold $rsd_threshold
         #end if
         --report '$report'
+        --ncpu \${GALAXY_SLOTS:-1}
         &&
         dimspy create-sample-list
         --input '$hdf5_file_out'