Mercurial > repos > computational-metabolomics > mspurity_combineannotations
diff combineAnnotations.xml @ 8:94a2b6571758 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 7e1748612a9f9dce11a9e54ff36752b600e7aea3
| author | computational-metabolomics |
|---|---|
| date | Wed, 12 Jun 2024 16:06:42 +0000 |
| parents | d4376a743f7b |
| children |
line wrap: on
line diff
--- a/combineAnnotations.xml Tue Feb 08 13:58:36 2022 +0000 +++ b/combineAnnotations.xml Wed Jun 12 16:06:42 2024 +0000 @@ -113,9 +113,10 @@ <test> <param name="sm_resultPth" value="combinedAnnotation_input_spectralMatching.sqlite" /> <param name="metfrag_resultPth" value="combineAnnotations_input_metfrag.tsv" /> - <param name="sirius_csi_resultPth" value="combineAnnotations_input_sirus_csifingerid.tsv" /> - <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> - <param name="beams_resultPth" value="combineAnnotations_input_beams.tsv" /> + <param name="sirius_csi_resultPth" value="combineAnnotations_input_sirus_csifingerid.tsv" /> + <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> + <param name="ms1_lookup_resultPth" value="combineAnnotations_input_beams.tsv" /> + <param name="ms1_lookup_keepAdducts" value="[M+H]+, [M+Na]+" /> <param name="compoundDbTypeCond|compoundDbPth" value="metab_compound_subset.sqlite" /> <output name="combined_annotations_tsv" file="combineAnnotations_combined_annotations.tsv" ftype="tsv" /> <output name="combined_annotations_sqlite" file="combineAnnotations_combined_annotations.sqlite" ftype="sqlite" compare="sim_size"/>