Mercurial > repos > computational-metabolomics > mspurity_filterfragspectra

comparison macros.xml @ 7:2e10c13085c9 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"
author computational-metabolomics
date Tue, 08 Feb 2022 14:02:03 +0000
parents cc0f8ddad4a8
children
comparison
equal deleted inserted replaced
6:cc0f8ddad4a8 7:2e10c13085c9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.16.2</token> 3 <token name="@TOOL_VERSION@">1.16.2</token>
4 <token name="@GALAXY_TOOL_VERSION@">0</token> 4 <token name="@GALAXY_TOOL_VERSION@">1</token>
5 5
6 <xml name="requirements"> 6 <xml name="requirements">
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> 8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement>
9 <requirement type="package" version="1.46.0" >bioconductor-camera</requirement> 9 <requirement type="package" version="1.46.0" >bioconductor-camera</requirement>
269 <option value="ESI-TOF" selected="true" >ESI-TOF</option> 269 <option value="ESI-TOF" selected="true" >ESI-TOF</option>
270 <option value="FAB-B">FAB-B</option> 270 <option value="FAB-B">FAB-B</option>
271 <option value="FAB-BE">FAB-BE</option> 271 <option value="FAB-BE">FAB-BE</option>
272 <option value="FAB-EB">FAB-EB</option> 272 <option value="FAB-EB">FAB-EB</option>
273 <option value="FAB-EBEB">FAB-EBEB</option> 273 <option value="FAB-EBEB">FAB-EBEB</option>
274 <option value="FAB-EBEB">FD-B</option> 274 <option value="FD-B">FD-B</option>
275 <option value="FI-B">FI-B</option> 275 <option value="FI-B">FI-B</option>
276 <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option> 276 <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option>
277 <option value="GC-EI-Q">GC-EI-Q</option> 277 <option value="GC-EI-Q">GC-EI-Q</option>
278 <option value="GC-EI-QQ">GC-EI-QQ</option> 278 <option value="GC-EI-QQ">GC-EI-QQ</option>
279 <option value="GC-EI-TOF">GC-EI-TOF</option> 279 <option value="GC-EI-TOF">GC-EI-TOF</option>
331 331
332 332
333 333
334 <conditional name="@QL_SHRT@_spectraTypes_cond"> 334 <conditional name="@QL_SHRT@_spectraTypes_cond">
335 <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?" 335 <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?"
336 help="" /> 336 help="Note that when using 'scan' spectra types the spectraFilter option may need to be FALSE
337 if 'allfrag' was not selecting when performing filterFragSpectra or if no filtering was performed at all" />
337 <when value="true"> 338 <when value="true">
338 <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true" label="Spectra type" > 339 <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true" label="Spectra type" >
339 <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option> 340 <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option>
340 <option value="inter">Averaged inter spectra</option> 341 <option value="inter">Averaged inter spectra</option>
341 <option value="intra">Averaged intra spectra </option> 342 <option value="intra">Averaged intra spectra </option>
342 <option value="scans">All individual scans</option> 343 <option value="scan">All individual scans (may need to set spectraFilter to false with this option)</option>
343 <option value="NA">Not applicable/defined</option> 344 <option value="NA">Not applicable/defined</option>
344 </param> 345 </param>
345 </when> 346 </when>
346 <when value="false"> 347 <when value="false">
347 </when> 348 </when>