Mercurial > repos > computational-metabolomics > mspurity_frag4feature
comparison macros.xml @ 7:e9fbb65451f6 draft
"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"
author | computational-metabolomics |
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date | Tue, 08 Feb 2022 14:04:07 +0000 |
parents | d4a17be5429a |
children | cb4aeec93d49 |
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6:d4a17be5429a | 7:e9fbb65451f6 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <macros> | 2 <macros> |
3 <token name="@TOOL_VERSION@">1.16.2</token> | 3 <token name="@TOOL_VERSION@">1.16.2</token> |
4 <token name="@GALAXY_TOOL_VERSION@">0</token> | 4 <token name="@GALAXY_TOOL_VERSION@">1</token> |
5 | 5 |
6 <xml name="requirements"> | 6 <xml name="requirements"> |
7 <requirements> | 7 <requirements> |
8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> | 8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> |
9 <requirement type="package" version="1.46.0" >bioconductor-camera</requirement> | 9 <requirement type="package" version="1.46.0" >bioconductor-camera</requirement> |
269 <option value="ESI-TOF" selected="true" >ESI-TOF</option> | 269 <option value="ESI-TOF" selected="true" >ESI-TOF</option> |
270 <option value="FAB-B">FAB-B</option> | 270 <option value="FAB-B">FAB-B</option> |
271 <option value="FAB-BE">FAB-BE</option> | 271 <option value="FAB-BE">FAB-BE</option> |
272 <option value="FAB-EB">FAB-EB</option> | 272 <option value="FAB-EB">FAB-EB</option> |
273 <option value="FAB-EBEB">FAB-EBEB</option> | 273 <option value="FAB-EBEB">FAB-EBEB</option> |
274 <option value="FAB-EBEB">FD-B</option> | 274 <option value="FD-B">FD-B</option> |
275 <option value="FI-B">FI-B</option> | 275 <option value="FI-B">FI-B</option> |
276 <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option> | 276 <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option> |
277 <option value="GC-EI-Q">GC-EI-Q</option> | 277 <option value="GC-EI-Q">GC-EI-Q</option> |
278 <option value="GC-EI-QQ">GC-EI-QQ</option> | 278 <option value="GC-EI-QQ">GC-EI-QQ</option> |
279 <option value="GC-EI-TOF">GC-EI-TOF</option> | 279 <option value="GC-EI-TOF">GC-EI-TOF</option> |
331 | 331 |
332 | 332 |
333 | 333 |
334 <conditional name="@QL_SHRT@_spectraTypes_cond"> | 334 <conditional name="@QL_SHRT@_spectraTypes_cond"> |
335 <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?" | 335 <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?" |
336 help="" /> | 336 help="Note that when using 'scan' spectra types the spectraFilter option may need to be FALSE |
337 if 'allfrag' was not selecting when performing filterFragSpectra or if no filtering was performed at all" /> | |
337 <when value="true"> | 338 <when value="true"> |
338 <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true" label="Spectra type" > | 339 <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true" label="Spectra type" > |
339 <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option> | 340 <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option> |
340 <option value="inter">Averaged inter spectra</option> | 341 <option value="inter">Averaged inter spectra</option> |
341 <option value="intra">Averaged intra spectra </option> | 342 <option value="intra">Averaged intra spectra </option> |
342 <option value="scans">All individual scans</option> | 343 <option value="scan">All individual scans (may need to set spectraFilter to false with this option)</option> |
343 <option value="NA">Not applicable/defined</option> | 344 <option value="NA">Not applicable/defined</option> |
344 </param> | 345 </param> |
345 </when> | 346 </when> |
346 <when value="false"> | 347 <when value="false"> |
347 </when> | 348 </when> |