Mercurial > repos > computational-metabolomics > mspurity_spectralmatching

diff macros.xml @ 7:20f4fdaf36bb draft

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"planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e3b17490a958d80ebe78ef1bebebef48948e1240"
author computational-metabolomics
date Tue, 08 Feb 2022 14:03:00 +0000
parents fecfe8c80e25
children 77706396e7bd
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--- a/macros.xml	Thu Mar 04 12:32:11 2021 +0000
+++ b/macros.xml	Tue Feb 08 14:03:00 2022 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">1.16.2</token>
-    <token name="@GALAXY_TOOL_VERSION@">0</token>
+    <token name="@GALAXY_TOOL_VERSION@">1</token>
 
     <xml name="requirements">
         <requirements>
@@ -271,7 +271,7 @@
                         <option value="FAB-BE">FAB-BE</option>
                         <option value="FAB-EB">FAB-EB</option>
                         <option value="FAB-EBEB">FAB-EBEB</option>
-                        <option value="FAB-EBEB">FD-B</option>
+                        <option value="FD-B">FD-B</option>
                         <option value="FI-B">FI-B</option>
                         <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option>
                         <option value="GC-EI-Q">GC-EI-Q</option>
@@ -333,13 +333,14 @@
 
             <conditional name="@QL_SHRT@_spectraTypes_cond">
                 <param name="@QL_SHRT@_spectraTypes_bool" type="boolean" label="Filter on spectral type?"
-                help="" />
+                help="Note that when using 'scan' spectra types the spectraFilter option may need to be FALSE 
+		      if 'allfrag' was not selecting when performing filterFragSpectra or if no filtering was performed at all" />
                 <when value="true">
                     <param argument="--@QL_SHRT@_spectraTypes" type="select" multiple="true"  label="Spectra type" >
                         <option value="av_all" selected="true">Averaged all spectra ignoring inter-intra relationships </option>
                         <option value="inter">Averaged inter spectra</option>
                         <option value="intra">Averaged intra spectra </option>
-                        <option value="scans">All individual scans</option>
+                        <option value="scan">All individual scans (may need to set spectraFilter to false with this option)</option>
                         <option value="NA">Not applicable/defined</option>
                     </param>
                 </when>