--- a/spectralMatching.xml	Fri Nov 13 10:02:32 2020 +0000
+++ b/spectralMatching.xml	Thu Mar 04 12:32:11 2021 +0000
@@ -221,6 +221,8 @@
     <tests>
         <test>
             <param name="q_dbPth" value="createDatabase_output.sqlite" />
+            <param name="q_spectraTypes_bool" value="true" />
+            <param name="q_spectraTypes" value="inter,av_all" />
 	        <param name="l_dbPth_select" value="userdb" />
             <param name="l_dbPth" value="PR100037.sqlite" />
             <param name="q_xcmsGroups_bool" value="true" />
@@ -234,6 +236,8 @@
         <test>
             <param name="l_instrumentTypes_bool" value="true" />
             <param name="q_dbPth" value="createDatabase_output.sqlite" />
+            <param name="q_spectraTypes_bool" value="true" />
+            <param name="q_spectraTypes" value="inter,av_all" />
 	    	<param name="l_dbPth_select" value="userdb" />
             <param name="l_dbPth" value="PR100037.sqlite" />
             <param name="q_xcmsGroups_bool" value="true" />
@@ -360,10 +364,10 @@
 for all MS/MS spectra irrespective of if they are linked to XCMS MS1 features.
 
 
-.. _spectral_database_schema: https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-datatabase-schema.html
+.. _spectral_database_schema: https://www.bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-database-vignette.html
 .. _larger_database: https://github.com/computational-metabolomics/msp2db/releases
 .. _msp2db: https://github.com/computational-metabolomics/msp2db/releases
-.. _msPurity_spectral_matching_vignette: https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.html
+.. _msPurity_spectral_matching_vignette: https://www.bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.html
 
     ]]></help>