Mercurial > repos > cpt > bprom_wrapper
comparison bprom_wrapped/bprom.xml @ 0:33464b8cbde7 draft default tip
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| author | cpt |
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| date | Fri, 01 Jul 2022 13:33:13 +0000 |
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| -1:000000000000 | 0:33464b8cbde7 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="edu.tamu.cpt.bprom" name="BPROM" version="1.0.0" profile="16.04"> | |
| 3 <description></description> | |
| 4 <macros/> | |
| 5 <requirements> | |
| 6 <requirement type="package">libgcc</requirement> | |
| 7 </requirements> | |
| 8 <command detect_errors="aggressive"> | |
| 9 export TSS_DATA=$__tool_directory__/bprom_libFiles; | |
| 10 $__tool_directory__/bprom $inFile $outFile | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param label="Fasta Sequence" name="inFile" type="data" format="fasta" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="txt" name="outFile" label="BPROM Results" /> | |
| 17 </outputs> | |
| 18 <help> | |
| 19 **What it does** | |
| 20 | |
| 21 Runs BPROM analysis on a fasta file. | |
| 22 </help> | |
| 23 <tests/> | |
| 24 <citations> | |
| 25 <citation type="bibtex"> | |
| 26 @unpublished{galaxyTools, | |
| 27 author = {V. Solovyev, A Salamov}, | |
| 28 title = {Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, p. 61-78 }, | |
| 29 year = {2011}, | |
| 30 | |
| 31 } | |
| 32 </citation> | |
| 33 </citations> | |
| 34 </tool> |