Mercurial > repos > cpt > cpt_annotation_table

comparison phage_annotation_table.xml @ 5:c618332f2386 draft

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planemo upload commit 8e1cddcc571bcc769e20a50cefd14053be5633d6-dirty
author cpt
date Fri, 24 May 2024 04:42:01 +0000
parents 9cb37bf9e298
children ef05dd3eabc3
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4:9cb37bf9e298 5:c618332f2386
10 @GENOME_SELECTOR_PRE@ 10 @GENOME_SELECTOR_PRE@
11 11
12 python '$__tool_directory__/phage_annotation_table.py' 12 python '$__tool_directory__/phage_annotation_table.py'
13 '$gff3_data' 13 '$gff3_data'
14 @GENOME_SELECTOR@ 14 @GENOME_SELECTOR@
15 --types "$extraTypes"
16 --reportTemplateName "$report_format" 15 --reportTemplateName "$report_format"
17 --annotationTableCols "$cols,$gaf_cols" 16 --annotationTableCols "$cols,$gaf_cols"
17 #if $extraTypes:
18 --types "$extraTypes"
19 #end if
18 #if $gaf_data: 20 #if $gaf_data:
19 --gafData "$gaf_data" 21 --gafData "$gaf_data"
20 #end if 22 #end if
21 --searchSubs '$checkSubfeats' 23 '$checkSubfeats'
22 > '$output']]></command> 24 > '$output']]></command>
23 <inputs> 25 <inputs>
24 <expand macro="gff3_input"/> 26 <expand macro="gff3_input"/>
25 <expand macro="genome_selector"/> 27 <expand macro="genome_selector"/>
26 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/> 28 <param label="Extra sub-feature types to include (Comma-separated, Will always include gene)" optional="True" name="extraTypes" type="text" value=""/>