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comparison cluster_lcbs.xml @ 1:e6d8cdb65df0 draft

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:40:20 +0000
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0:85cd5feab3b7 1:e6d8cdb65df0
1 <tool id="edu.tamu.cpt.cluster_lcbs" name="Merge LCBs within a given threshold distance" version="@WRAPPER_VERSION@.0">
2 <description/>
3 <macros>
4 <import>macros.xml</import>
5 <import>cpt-macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[
9 'python $__tool_directory__/cluster_lcbs.py'
10 @XMFA_INPUT@
11 '$threshold'
12 > '$output'
13 ]]></command>
14 <inputs>
15 <expand macro="xmfa_input"/>
16 <param type="integer" name="threshold" value="50" label="maximum number of nucleotides between LCBs in a cluster"/>
17 </inputs>
18 <outputs>
19 <data format="xmfa" name="output"/>
20 </outputs>
21 <help><![CDATA[
22 **What it does**
23
24 Merges LCBs near each other into one LCB. Helps with cluttered-looking data due to multiple LCBs.
25
26 **WARNING**
27
28 Might not work if you have - strand genes. Need to test.
29
30 ]]></help>
31 <!-- TODO -->
32 <expand macro="citations"/>
33 </tool>