Mercurial > repos > cpt > cpt_convert_glimmer

comparison cpt_convert_glimmer_to_gff3.py @ 9:14306e57683d draft

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planemo upload commit 543b712032e171c27da08e1dfe44b173cdfbe0bd
author cpt
date Thu, 27 Jul 2023 04:10:30 +0000
parents 843ea2c82e9a
children
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8:e132a07229c4 9:14306e57683d
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 import sys 2 import sys
3 import argparse 3 import argparse
4 from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature 4 from CPT_GFFParser import gffWrite, gffSeqFeature
5 from Bio import SeqIO 5 from Bio import SeqIO
6 from Bio.SeqFeature import SeqFeature
7 from Bio.SeqFeature import FeatureLocation 6 from Bio.SeqFeature import FeatureLocation
8 import logging 7 import logging
9 8
10 logging.basicConfig(level=logging.INFO) 9 logging.basicConfig(level=logging.INFO)
11 10