Mercurial > repos > cpt > cpt_convert_glimmer

changeset 9:14306e57683d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 543b712032e171c27da08e1dfe44b173cdfbe0bd
author cpt
date Thu, 27 Jul 2023 04:10:30 +0000
parents e132a07229c4
children faff58a642fb
files cpt_convert_glimmer_to_gff3.py cpt_convert_glimmer_to_gff3.xml
diffstat 2 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/cpt_convert_glimmer_to_gff3.py	Sun Jul 23 21:01:09 2023 +0000
+++ b/cpt_convert_glimmer_to_gff3.py	Thu Jul 27 04:10:30 2023 +0000
@@ -1,9 +1,8 @@
 #!/usr/bin/env python
 import sys
 import argparse
-from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature
+from CPT_GFFParser import gffWrite, gffSeqFeature
 from Bio import SeqIO
-from Bio.SeqFeature import SeqFeature
 from Bio.SeqFeature import FeatureLocation
 import logging
 
--- a/cpt_convert_glimmer_to_gff3.xml	Sun Jul 23 21:01:09 2023 +0000
+++ b/cpt_convert_glimmer_to_gff3.xml	Thu Jul 27 04:10:30 2023 +0000
@@ -4,10 +4,13 @@
         <import>cpt-macros.xml</import>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements"/>
+    <expand macro="requirements">
+        <requirement type="package" version="3.9.16">python</requirement>
+        <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
+        <requirement type="package" version="1.81">biopython</requirement>
+    </expand>
     <command detect_errors="aggressive"><![CDATA[
 @GENOME_SELECTOR_PRE@
-
 'python $__tool_directory__/cpt_convert_glimmer_to_gff3.py'
 '$glimmer'
 @GENOME_SELECTOR@