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comparison cpt_convert_mga_to_gff3.xml @ 10:4100ee965124 draft

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:40:41 +0000
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1 <tool id="edu.tamu.cpt2.util.mga_to_gff3" name="MGA to GFF3" version="19.1.0.0">
2 <description/>
3 <macros>
4 <import>cpt-macros.xml</import>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[
9 @GENOME_SELECTOR_PRE@
10
11 python '$__tool_directory__/cpt_convert_mga_to_gff3.py'
12 '$mga'
13 @GENOME_SELECTOR@
14 > '$data' ]]>
15 </command>
16 <inputs>
17 <param label="MGA Output" name="mga" type="data" format="txt"/>
18 <expand macro="genome_selector"/>
19 </inputs>
20 <outputs>
21 <data format="gff3" name="data">
22 </data>
23 </outputs>
24 <tests>
25 <test>
26 <param name="reference_genome_source" value="history"/>
27 <param name="genome_fasta" value="ConvMga_In.fa"/>
28 <param name="mga" value="ConvMga_In.out"/>
29 <output name="data" file="ConvMga_Out.gff3"/>
30 </test>
31 </tests>
32 <help>
33 **What it does**
34
35 Converts an input MetaGeneAnnotator table to the GFF3 format.
36 </help>
37 <expand macro="citations"/>
38 </tool>