Mercurial > repos > cpt > cpt_convert_trnascan_se
comparison cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml @ 0:b4134ad44443 draft
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author | cpt |
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date | Fri, 13 May 2022 18:03:32 +0000 |
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-1:000000000000 | 0:b4134ad44443 |
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1 <?xml version="1.0"?> | |
2 <tool id="tRNA-SE_scan_to_gff" name="Convert tRNAscan-SE table to gff format" version="20.0.0"> | |
3 <description></description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 <import>cpt-macros.xml</import> | |
7 </macros> | |
8 <expand macro="requirements"/> | |
9 <command detect_errors="aggressive"><![CDATA[ | |
10 python $__tool_directory__/tRNAscan_to_gff_SE_format.py | |
11 < $trnascan | |
12 > $output | |
13 ]]></command> | |
14 <inputs> | |
15 <param format="tabular" type="data" name="trnascan" label="tRNAscan table" /> | |
16 </inputs> | |
17 <outputs> | |
18 <data format="gff3" name="output"> | |
19 </data> | |
20 </outputs> | |
21 <tests> | |
22 <test> | |
23 <param name="trnascan" value="ConvTrnaSe_In.tabular" /> | |
24 <output name="output" file="ConvTrnaSe_Out.gff3" /> | |
25 </test> | |
26 </tests> | |
27 <help><![CDATA[ | |
28 What it does | |
29 ============ | |
30 | |
31 Converts tRNAscan-SE table to gff format | |
32 | |
33 ]]></help> | |
34 <expand macro="citations" /> | |
35 </tool> |