Mercurial > repos > cpt > cpt_convert_trnascan_se
diff cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml @ 0:b4134ad44443 draft
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author | cpt |
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date | Fri, 13 May 2022 18:03:32 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml Fri May 13 18:03:32 2022 +0000 @@ -0,0 +1,35 @@ +<?xml version="1.0"?> +<tool id="tRNA-SE_scan_to_gff" name="Convert tRNAscan-SE table to gff format" version="20.0.0"> + <description></description> + <macros> + <import>macros.xml</import> + <import>cpt-macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +python $__tool_directory__/tRNAscan_to_gff_SE_format.py +< $trnascan +> $output +]]></command> + <inputs> + <param format="tabular" type="data" name="trnascan" label="tRNAscan table" /> + </inputs> + <outputs> + <data format="gff3" name="output"> + </data> + </outputs> + <tests> + <test> + <param name="trnascan" value="ConvTrnaSe_In.tabular" /> + <output name="output" file="ConvTrnaSe_Out.gff3" /> + </test> + </tests> + <help><![CDATA[ +What it does +============ + +Converts tRNAscan-SE table to gff format + +]]></help> + <expand macro="citations" /> +</tool>