--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cpt_disruptin_table/Disruptin_hydrophobicity_helicity_table_package.xml	Fri Jun 17 12:33:22 2022 +0000
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool id="edu.tamu.cpt2.phage.disruptin_table" name="Disruptin Table Output" version="1.0">
+    <description>makes table of disruptin candidates</description>
+    <macros>
+		<import>macros.xml</import>
+		<import>cpt-macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+	<command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/Disruptin_hydrophobicity_helicity_table_package.py
+$garnier_file
+$fasta_file
+
+
+
+>$output]]></command>
+    <inputs>
+        <param label="Garnier csv file" name="garnier_file" type="data" format="tabular" />
+		<param label="Candidate fasta file" name="fasta_file" type="data" format="fasta" />
+    </inputs>
+    <outputs>
+		<data format="tabular" name="output"/>
+    </outputs>
+    <help><![CDATA[
+**What it does**
+This program takes the parsed output from the garnier tool and the fasta file with disruptin candidate sequences
+and compiles information on each of the sequences into a table format. The table includes the sequence and the position for each residue
+as well as the charge, hydrophobicity (based on the Kyte Doolittle scale), and secondary structure prediction from
+the garnier tool.
+
+        ]]></help>
+		<expand macro="citations" />
+</tool>