Mercurial > repos > cpt > cpt_disruptin_table

diff cpt_disruptin_table/macros.xml @ 0:f3fc78cc4c43 draft

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author cpt
date Fri, 17 Jun 2022 12:33:22 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cpt_disruptin_table/macros.xml	Fri Jun 17 12:33:22 2022 +0000
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<macros>
+  <xml name="requirements">
+    <requirements>
+		<requirement type="package" version="3.8.13">python</requirement>
+		<requirement type="package" version="1.79">biopython</requirement>
+		<requirement type="package" version="1.2.2">cpt_gffparser</requirement>  
+		<yield/>
+    </requirements>
+  </xml>
+  <xml name="genome_selector">
+	    <param name="genome_fasta" type="data" format="fasta" label="Source FASTA Sequence"/>
+  </xml>
+  <xml name="gff3_input">
+    <param label="GFF3 Annotations" name="gff3_data" type="data" format="gff3"/>
+  </xml>
+  <token name="@GENOME_SELECTOR_PRE@">
+		ln -s $genome_fasta genomeref.fa;
+	</token>
+	<token name="@GENOME_SELECTOR@">
+		genomeref.fa
+	</token>
+</macros>