Mercurial > repos > cpt > cpt_find_spanins

comparison findSpanin.py @ 5:46b252c89e9e draft

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planemo upload commit 25fff8b3887beeb66c2d53e2a32f9af9f34e40b6
author cpt
date Fri, 20 Sep 2024 04:19:02 +0000
parents 673d1776d3b9
children 81bd9b752628
comparison
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4:673d1776d3b9 5:46b252c89e9e
1 ##### findSpanin.pl --> findSpanin.py 1 ##### findSpanin.pl --> findSpanin.py
2 ######### Much of this code is very "blocked", in the sense that one thing happens...then a function happens on the return...then another function...etc...etc... 2 ######### Much of this code is very "blocked", in the sense that one thing happens...then a function happens on the return...then another function...etc...etc...
3 3
4 import argparse 4 import argparse
5 import os
6 import re # new 5 import re # new
7 import itertools # new 6 from collections import Counter
8 from collections import Counter, OrderedDict
9 from spaninFuncs import ( 7 from spaninFuncs import (
10 getDescriptions, 8 getDescriptions,
11 grabLocs, 9 grabLocs,
12 spaninProximity, 10 spaninProximity,
13 splitStrands,
14 tuple_fasta, 11 tuple_fasta,
15 lineWrapper, 12 lineWrapper,
16 ) 13 )
17 14
18 ### Requirement Inputs 15 ### Requirement Inputs