Mercurial > repos > cpt > cpt_find_spanins
diff cpt.py @ 5:46b252c89e9e draft
planemo upload commit 25fff8b3887beeb66c2d53e2a32f9af9f34e40b6
| author | cpt |
|---|---|
| date | Fri, 20 Sep 2024 04:19:02 +0000 |
| parents | 9708448ce811 |
| children |
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--- a/cpt.py Fri Jan 05 05:51:06 2024 +0000 +++ b/cpt.py Fri Sep 20 04:19:02 2024 +0000 @@ -4,6 +4,7 @@ from Bio import SeqIO from Bio.Data import CodonTable import logging +import regex as re logging.basicConfig() log = logging.getLogger() @@ -147,7 +148,7 @@ if index % 3 != 0: continue n = s[start:index] - for (offset, n, t) in self.start_chop_and_trans(n): + for offset, n, t in self.start_chop_and_trans(n): if n and len(t) >= self.min_len: yield start + offset, n, t start = index @@ -294,7 +295,7 @@ if index % 3 != 0: continue n = s[start:index] - for (offset, n, t) in self.start_chop_and_trans(n): + for offset, n, t in self.start_chop_and_trans(n): if n and len(t) >= self.min_len: yield start + offset, n, t start = index