Mercurial > repos > cpt > cpt_gbk_adjacent

comparison adjacent_features.xml @ 2:e2531f4dcdde draft default tip

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planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author cpt
date Fri, 05 Jan 2024 05:51:24 +0000
parents e29c36ee61e0
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1:e29c36ee61e0 2:e2531f4dcdde
1 <tool id="edu.tamu.cpt2.gbk.adjacent_features" name="Find adjacent Genbank features" version="RC4"> 1 <tool id="edu.tamu.cpt2.gbk.adjacent_features" name="Find adjacent Genbank features" version="RC4">
2 <description>Searches a Genbank file for a given FASTA sequence, then outputs a file with adjacent upstream features, and another with adjacent downstream features.</description> 2 <description>Searches a Genbank file for a given FASTA sequence, then outputs a file with adjacent upstream features, and another with adjacent downstream features.</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <import>cpt-macros.xml</import> 5
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 python '$__tool_directory__/adjacent_features.py' 9 python '$__tool_directory__/adjacent_features.py'
10 #set repeat_var_1 = '" "'.join([ str('$var') for '$var' in '$gbkIn' ]) 10 #set repeat_var_1 = '" "'.join([ str('$var') for '$var' in '$gbkIn' ])