Mercurial > repos > cpt > cpt_genome_editor
annotate tsv.py @ 4:78ce8a1a8fd1 draft
planemo upload commit 852ac96ca53a2ffa0947e6df5e24671866b642f5
author | cpt |
---|---|
date | Sun, 23 Jul 2023 01:43:12 +0000 |
parents | 134bb2d7cdfd |
children |
rev | line source |
---|---|
3
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
1 import sys |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
2 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
3 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
4 # Like 'import json' / 'import yaml', except.. tab data. |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
5 def loads(str_data): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
6 return NotImplementedError() |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
7 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
8 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
9 def load(handle): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
10 return NotImplementedError() |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
11 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
12 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
13 def dump(data, handle=sys.stdout): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
14 for row in data: |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
15 handle.write("%s\n" % "\t".join(map(str, row))) |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
16 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
17 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
18 def dumps(data): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
19 output = "" |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
20 for row in data: |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
21 output += "%s\n" % "\t".join(map(str, row)) |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
22 return output |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
23 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
24 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
25 def dump_line(row, handle=sys.stdout): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
26 dump([row], handle=handle) |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
27 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
28 |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
29 def dumps_line(row): |
134bb2d7cdfd
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
30 return dumps([row]) |