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comparison macros.xml @ 8:759ba1430091 draft

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planemo upload commit 163cc633d25c2a79bbcb0b58762bf8f92cb1211e-dirty
author cpt
date Fri, 01 Dec 2023 04:07:14 +0000
parents 706058e804d1
children 9264ac799feb
comparison
equal deleted inserted replaced
7:7d9d49be8876 8:759ba1430091
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.6.4">bcbiogff</requirement> 4 <requirement type="package" version="0.6.4">bcbiogff</requirement>
5 <requirement type="package" version="3.9">python</requirement>
6 <requirement type="package" version="1.65">biopython</requirement>
7 <requirement type="package" version="2.12.1">requests</requirement>
8 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
5 <yield/> 9 <yield/>
6 </requirements> 10 </requirements>
7 </xml> 11 </xml>
8 <token name="@WRAPPER_VERSION@">2.4.0</token> 12 <token name="@WRAPPER_VERSION@">2.4.0</token>
9 <xml name="citation/progressive_mauve">
10 <citation type="doi">10.1371/journal.pone.0011147</citation>
11 </xml>
12 <xml name="citation/gepard"> 13 <xml name="citation/gepard">
13 <citation type="doi">10.1093/bioinformatics/btm039</citation> 14 <citation type="doi">10.1093/bioinformatics/btm039</citation>
14 </xml> 15 </xml>
15 <token name="@XMFA_INPUT@"> 16 <token name="@XMFA_INPUT@">
16 '$xmfa' 17 '$xmfa'
45 </xml> 46 </xml>
46 <xml name="input/gff3+fasta"> 47 <xml name="input/gff3+fasta">
47 <expand macro="gff3_input"/> 48 <expand macro="gff3_input"/>
48 <expand macro="genome_selector"/> 49 <expand macro="genome_selector"/>
49 </xml> 50 </xml>
51 <xml name="citation/mijalisrasche">
52 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
53 <citation type="bibtex">@unpublished{galaxyTools,
54 author = {E. Mijalis, H. Rasche},
55 title = {CPT Galaxy Tools},
56 year = {2013-2017},
57 note = {https://github.com/tamu-cpt/galaxy-tools/}
58 }
59 </citation>
60 </xml>
61 <xml name="citations">
62 <citations>
63 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
64 <citation type="bibtex">
65 @unpublished{galaxyTools,
66 author = {E. Mijalis, H. Rasche},
67 title = {CPT Galaxy Tools},
68 year = {2013-2017},
69 note = {https://github.com/tamu-cpt/galaxy-tools/}
70 }
71 </citation>
72 <yield/>
73 </citations>
74 </xml>
75 <xml name="citations-crr">
76 <citations>
77 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
78 <citation type="bibtex">
79 @unpublished{galaxyTools,
80 author = {C. Ross},
81 title = {CPT Galaxy Tools},
82 year = {2020-},
83 note = {https://github.com/tamu-cpt/galaxy-tools/}
84 }
85 </citation>
86 <yield/>
87 </citations>
88 </xml>
89 <xml name="citations-2020">
90 <citations>
91 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
92 <citation type="bibtex">
93 @unpublished{galaxyTools,
94 author = {E. Mijalis, H. Rasche},
95 title = {CPT Galaxy Tools},
96 year = {2013-2017},
97 note = {https://github.com/tamu-cpt/galaxy-tools/}
98 }
99 </citation>
100 <citation type="bibtex">
101 @unpublished{galaxyTools,
102 author = {A. Criscione},
103 title = {CPT Galaxy Tools},
104 year = {2019-2021},
105 note = {https://github.com/tamu-cpt/galaxy-tools/}
106 }
107 </citation>
108 <yield/>
109 </citations>
110 </xml>
111 <xml name="citations-2020-AJC-solo">
112 <citations>
113 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
114 <citation type="bibtex">
115 @unpublished{galaxyTools,
116 author = {A. Criscione},
117 title = {CPT Galaxy Tools},
118 year = {2019-2021},
119 note = {https://github.com/tamu-cpt/galaxy-tools/}
120 }
121 </citation>
122 <yield/>
123 </citations>
124 </xml>
125 <xml name="citations-clm">
126 <citations>
127 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
128 <citation type="bibtex">
129 @unpublished{galaxyTools,
130 author = {C. Maughmer},
131 title = {CPT Galaxy Tools},
132 year = {2017-2020},
133 note = {https://github.com/tamu-cpt/galaxy-tools/}
134 }
135 </citation>
136 <yield/>
137 </citations>
138 </xml>
139 <xml name="sl-citations-clm">
140 <citation type="bibtex">
141 @unpublished{galaxyTools,
142 author = {C. Maughmer},
143 title = {CPT Galaxy Tools},
144 year = {2017-2020},
145 note = {https://github.com/tamu-cpt/galaxy-tools/}
146 }
147 </citation>
148 <yield/>
149 </xml>
50 <token name="@INPUT_GFF@"> 150 <token name="@INPUT_GFF@">
51 '$gff3_data' 151 '$gff3_data'
52 </token> 152 </token>
53 <token name="@INPUT_FASTA@"> 153 <token name="@INPUT_FASTA@">
54 #if str($reference_genome.reference_genome_source) == 'cached': 154 #if str($reference_genome.reference_genome_source) == 'cached':