Mercurial > repos > cpt > cpt_helical_wheel

annotate generateHelicalWheel.py @ 2:e9fb56f44c35 draft default tip

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planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author cpt
date Fri, 05 Jan 2024 05:52:58 +0000
parents 9b276485c94a
children
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1 ##
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2
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3 import argparse
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4 from plotWheels.helical_wheel import helical_wheel
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5
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6 if __name__ == "__main__":
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7 parser = argparse.ArgumentParser(description="Generate Helical Wheel")
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8 parser.add_argument("--sequence", dest="sequence", type=str)
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9 parser.add_argument("--seqRange", dest="seqRange", type=int, default=1)
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10 parser.add_argument("--t_size", dest="t_size", type=int, default=32)
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11 parser.add_argument("--rotation", dest="rotation", type=int, default=90)
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12 parser.add_argument(
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13 "--numbering", action="store_true", help="numbering for helical wheel"
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14 )
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15 parser.add_argument(
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16 "--output",
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17 dest="output",
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18 type=argparse.FileType("wb"),
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19 default="_helicalwheel.png",
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20 ) # dest="output",default="_helicalwheel.png")
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21 #### circle colors
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22 parser.add_argument("--f_A", dest="f_A", default="#ffcc33")
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23 parser.add_argument("--f_C", dest="f_C", default="#b5b5b5")
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24 parser.add_argument("--f_D", dest="f_D", default="#db270f")
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25 parser.add_argument("--f_E", dest="f_E", default="#db270f")
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26 parser.add_argument("--f_F", dest="f_F", default="#ffcc33")
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27 parser.add_argument("--f_G", dest="f_G", default="#b5b5b5")
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28 parser.add_argument("--f_H", dest="f_H", default="#12d5fc")
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29 parser.add_argument("--f_I", dest="f_I", default="#ffcc33")
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30 parser.add_argument("--f_K", dest="f_K", default="#12d5fc")
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31 parser.add_argument("--f_L", dest="f_L", default="#ffcc33")
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32 parser.add_argument("--f_M", dest="f_M", default="#ffcc33")
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33 parser.add_argument("--f_N", dest="f_N", default="#b5b5b5")
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34 parser.add_argument("--f_P", dest="f_P", default="#ffcc33")
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35 parser.add_argument("--f_Q", dest="f_Q", default="#b5b5b5")
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36 parser.add_argument("--f_R", dest="f_R", default="#12d5fc")
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37 parser.add_argument("--f_S", dest="f_S", default="#b5b5b5")
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38 parser.add_argument("--f_T", dest="f_T", default="#b5b5b5")
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39 parser.add_argument("--f_V", dest="f_V", default="#ffcc33")
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40 parser.add_argument("--f_W", dest="f_W", default="#ffcc33")
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41 parser.add_argument("--f_Y", dest="f_Y", default="#b5b5b5")
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42 ### text colors
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43 parser.add_argument("--t_A", dest="t_A", default="k")
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44 parser.add_argument("--t_C", dest="t_C", default="k")
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45 parser.add_argument("--t_D", dest="t_D", default="w")
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46 parser.add_argument("--t_E", dest="t_E", default="w")
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47 parser.add_argument("--t_F", dest="t_F", default="k")
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48 parser.add_argument("--t_G", dest="t_G", default="k")
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49 parser.add_argument("--t_H", dest="t_H", default="k")
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50 parser.add_argument("--t_I", dest="t_I", default="k")
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51 parser.add_argument("--t_K", dest="t_K", default="k")
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52 parser.add_argument("--t_L", dest="t_L", default="k")
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53 parser.add_argument("--t_M", dest="t_M", default="k")
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54 parser.add_argument("--t_N", dest="t_N", default="k")
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55 parser.add_argument("--t_P", dest="t_P", default="k")
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56 parser.add_argument("--t_Q", dest="t_Q", default="k")
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57 parser.add_argument("--t_R", dest="t_R", default="k")
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58 parser.add_argument("--t_S", dest="t_S", default="k")
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59 parser.add_argument("--t_T", dest="t_T", default="k")
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60 parser.add_argument("--t_V", dest="t_V", default="k")
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61 parser.add_argument("--t_W", dest="t_W", default="k")
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62 parser.add_argument("--t_Y", dest="t_Y", default="k")
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63
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64 args = parser.parse_args()
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65
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66 # print(type(args.output))
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67
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68 f_colors = [
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69 args.f_A,
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70 args.f_C,
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71 args.f_D,
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72 args.f_E,
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73 args.f_F,
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74 args.f_G,
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75 args.f_H,
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76 args.f_I,
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77 args.f_K,
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78 args.f_L,
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79 args.f_M,
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80 args.f_N,
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81 args.f_P,
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82 args.f_Q,
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83 args.f_R,
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84 args.f_S,
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85 args.f_T,
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86 args.f_V,
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87 args.f_W,
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88 args.f_Y,
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89 ]
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90
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91 t_colors = [
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92 args.t_A,
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93 args.t_C,
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94 args.t_D,
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95 args.t_E,
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96 args.t_F,
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97 args.t_G,
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98 args.t_H,
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99 args.t_I,
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100 args.t_K,
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101 args.t_L,
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102 args.t_M,
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103 args.t_N,
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104 args.t_P,
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105 args.t_Q,
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106 args.t_R,
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107 args.t_S,
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108 args.t_T,
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109 args.t_V,
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110 args.t_W,
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111 args.t_Y,
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112 ]
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113
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114 colors = [f_colors, t_colors]
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115
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116 tmp_file = "./tmp.png"
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117
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118 helical_wheel(
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119 sequence=args.sequence,
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120 colorcoding=colors[0],
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121 text_color=colors[1],
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122 seqRange=args.seqRange,
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123 t_size=args.t_size,
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124 rot=args.rotation,
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125 numbering=args.numbering,
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126 filename=tmp_file,
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127 )
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128
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129 with open("tmp.png", "rb") as f:
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130 for line in f:
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131 args.output.write(line)