Mercurial > repos > cpt > cpt_linear_genome_plot

comparison dna_features_viewer/biotools.py @ 3:b79e98299a78 draft

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planemo upload commit b9287cffb7503159debac57d68917f5d337f0c9e-dirty
author cpt
date Fri, 28 Jun 2024 03:17:21 +0000
parents e923c686ead9
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2:b36bdd17d99a 3:b79e98299a78
32 Uses BioPython for speed. 32 Uses BioPython for speed.
33 """ 33 """
34 return complement(sequence)[::-1] 34 return complement(sequence)[::-1]
35 35
36 36
37 aa_short_to_long_form_dict = { 37 if type(aa1) is str and type(aa3) is list:
38 _aa1: _aa3[0] + _aa3[1:].lower() for (_aa1, _aa3) in zip(aa1 + "*", aa3 + ["*"]) 38 aa_short_to_long_form_dict = {
39 } 39 _aa1: _aa3[0] + _aa3[1:].lower() for (_aa1, _aa3) in zip(aa1 + "*", aa3 + ["*"])
40 }
41 else:
42 aa_short_to_long_form_dict = {
43 _aa1: _aa3[0] + _aa3[1:].lower()
44 for (_aa1, _aa3) in zip(aa1 + ("*",), aa3 + ("*",))
45 }
40 46
41 47
42 def translate(dna_sequence, long_form=False): 48 def translate(dna_sequence, long_form=False):
43 """Translate the DNA sequence into an amino-acids sequence MLKYQT... 49 """Translate the DNA sequence into an amino-acids sequence MLKYQT...
44 50