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author cpt
date Fri, 17 Jun 2022 13:00:50 +0000
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="3.8.13">python</requirement>
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6 <requirement type="package" version="1.79">biopython</requirement>
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7 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
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8 <yield/>
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9 </requirements>
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10 </xml>
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11 <xml name="genome_selector">
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12 <param name="genome_fasta" type="data" format="fasta" label="Source FASTA Sequence"/>
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13 </xml>
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14 <xml name="gff3_input">
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15 <param label="GFF3 Annotations" name="gff3_data" type="data" format="gff3"/>
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16 </xml>
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17 <token name="@GENOME_SELECTOR_PRE@">
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18 ln -s $genome_fasta genomeref.fa;
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19 </token>
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20 <token name="@GENOME_SELECTOR@">
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21 genomeref.fa
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22 </token>
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23 </macros>