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comparison cpt_phageqc_annotation/macros.xml @ 0:c3140b08d703 draft default tip

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author cpt
date Fri, 17 Jun 2022 13:00:50 +0000
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1 <?xml version="1.0"?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="3.8.13">python</requirement>
6 <requirement type="package" version="1.79">biopython</requirement>
7 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
8 <yield/>
9 </requirements>
10 </xml>
11 <xml name="genome_selector">
12 <param name="genome_fasta" type="data" format="fasta" label="Source FASTA Sequence"/>
13 </xml>
14 <xml name="gff3_input">
15 <param label="GFF3 Annotations" name="gff3_data" type="data" format="gff3"/>
16 </xml>
17 <token name="@GENOME_SELECTOR_PRE@">
18 ln -s $genome_fasta genomeref.fa;
19 </token>
20 <token name="@GENOME_SELECTOR@">
21 genomeref.fa
22 </token>
23 </macros>