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annotate cpt_gff_apollo_prep/test-data/ApolloPrep_Out.gff3 @ 2:6901154b1003 draft default tip

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author cpt
date Fri, 20 May 2022 08:59:37 +0000
parents eb0c42719156
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1 ##gff-version 3
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2 testseq_2018-03-08 feature gene 154 297 . - . ID=testseq_2018-03-08.gene_1;source2=MGA;uniqueID=offset-159323;
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3 testseq_2018-03-08 feature CDS 154 297 . - 0 ID=testseq_2018-03-08.cds_gene_1;Parent=testseq_2018-03-08.gene_1;source2=MGA;uniqueID=offset-159409;
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4 testseq_2018-03-08 cpt.prepApollo exon 154 297 . - . ID=testseq_2018-03-08.gene_1.exon;Parent=testseq_2018-03-08.gene_1;ApolloExon=True;
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cpt
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5 testseq_2018-03-08 feature CDS 154 297 . - 0 ID=testseq_2018-03-08.cds_gene_1;Parent=testseq_2018-03-08.gene_1.exon;source2=MGA;uniqueID=offset-159409;
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6 testseq_2018-03-08 feature gene 314 507 . - . ID=testseq_2018-03-08.gene_2;source2=MGA;uniqueID=offset-159674;
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7 testseq_2018-03-08 feature CDS 314 490 . - 0 ID=testseq_2018-03-08.cds_gene_2;Parent=testseq_2018-03-08.gene_2;source2=MGA;uniqueID=offset-159760;
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8 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 504 507 . - . ID=testseq_2018-03-08.cds_gene_2.rbs-0;Parent=testseq_2018-03-08.gene_2;uniqueID=offset-160090;
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9 testseq_2018-03-08 cpt.prepApollo exon 314 490 . - . ID=testseq_2018-03-08.gene_2.exon;Parent=testseq_2018-03-08.gene_2;ApolloExon=True;
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cpt
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10 testseq_2018-03-08 feature CDS 314 490 . - 0 ID=testseq_2018-03-08.cds_gene_2;Parent=testseq_2018-03-08.gene_2.exon;source2=MGA;uniqueID=offset-159760;
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11 testseq_2018-03-08 feature gene 487 670 . - . ID=testseq_2018-03-08.gene_3;source2=MGA;uniqueID=offset-159882;
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12 testseq_2018-03-08 feature exon 487 657 . - . ID=testseq_2018-03-08.exon_gene_3;Parent=testseq_2018-03-08.gene_3;source2=MGA;uniqueID=offset-159968;
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13 testseq_2018-03-08 feature CDS 487 657 . - 0 ID=testseq_2018-03-08.cds_gene_3;Parent=testseq_2018-03-08.exon_gene_3;source2=MGA;uniqueID=offset-159969;
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14 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 665 670 . - . ID=testseq_2018-03-08.cds_gene_3.rbs-0;Parent=testseq_2018-03-08.gene_3;uniqueID=offset-160441;
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15 testseq_2018-03-08 feature gene 700 900 . - . ID=testseq_2018-03-08.gene_4;source2=MGA;uniqueID=offset-159874;
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16 testseq_2018-03-08 feature CDS 700 790 . - 0 ID=testseq_2018-03-08.cds_gene_4;Parent=testseq_2018-03-08.gene_4;source2=MGA;uniqueID=offset-159765;
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17 testseq_2018-03-08 feature CDS 820 900 . - 0 ID=testseq_2018-03-08.cds2_gene_4;Parent=testseq_2018-03-08.gene_4;source2=MGA;uniqueID=offset-159762;
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18 testseq_2018-03-08 cpt.prepApollo exon 700 900 . - . ID=testseq_2018-03-08.gene_4.exon;Parent=testseq_2018-03-08.gene_4;ApolloExon=True;
eb0c42719156 Uploaded
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19 testseq_2018-03-08 feature CDS 700 790 . - 0 ID=testseq_2018-03-08.cds_gene_4;Parent=testseq_2018-03-08.gene_4.exon;source2=MGA;uniqueID=offset-159765;
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cpt
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20 testseq_2018-03-08 feature CDS 820 900 . - 0 ID=testseq_2018-03-08.cds2_gene_4;Parent=testseq_2018-03-08.gene_4.exon;source2=MGA;uniqueID=offset-159762;