Mercurial > repos > cpt > cpt_psm_comparison_table
annotate lib/CPT/ParameterCollection.pm @ 1:f093e08f21f3 draft default tip
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author | cpt |
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date | Mon, 05 Jun 2023 02:47:24 +0000 |
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1 package CPT::ParameterCollection; |
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2 use Carp; |
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3 use Moose; |
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4 use strict; |
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5 use warnings; |
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6 use autodie; |
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7 use Data::Dumper; |
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8 |
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9 # A collection of parameters |
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10 |
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11 has 'params' => ( is => 'rw', isa => 'ArrayRef', default => sub{[]}); |
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12 |
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13 |
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14 sub validate { |
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15 my ( $self, $getopt_obj) = @_; |
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16 my $issue_count = 0; |
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17 for my $item ( @{ $self->params() } ) { |
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18 my $type = ref($item); |
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19 # We now check that getopt has supplied a value (we don't want to validate values that were NOT supplied. That'd be dumb) |
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20 # If it's defined AND it doesn't validate, then we add an error on the stack for that. |
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21 if(defined $item->name() && defined $getopt_obj->{$item->name()} && !$item->validate()){ |
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22 carp join("\n", @{$item->errors()}); |
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23 $issue_count++; |
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24 } |
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25 } |
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26 return $issue_count == 0; |
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27 } |
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28 |
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29 |
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30 |
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31 sub push_group { |
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32 my ( $self, $group ) = @_; |
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33 $self->push_params($group->flattenOptionsArray()); |
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34 } |
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35 |
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36 |
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37 sub push_param { |
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38 my ( $self, $param ) = @_; |
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39 $self->_push($self->_coerce_param($_)); |
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40 } |
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41 |
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42 |
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43 sub push_params { |
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44 my ( $self, $array_ref ) = @_; |
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45 foreach(@{$array_ref}){ |
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46 my $result = $self->_coerce_param($_); |
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47 if($result){ |
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48 $self->_push($result); |
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49 } |
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50 } |
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51 } |
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52 |
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53 sub _push{ |
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54 my ( $self, $array_ref ) = @_; |
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55 my @arr; |
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56 if($self->params()){ |
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57 @arr = @{$self->params()}; |
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58 } |
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59 push(@arr, $array_ref); |
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60 $self->params(\@arr); |
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61 } |
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62 |
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63 |
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64 sub parse_short_name { |
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65 my ( $self, $parameter ) = @_; |
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66 if ( index( $parameter, '|' ) > -1 ) { |
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67 return substr( $parameter, index( $parameter, '|' ) + 1 ); |
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68 } |
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69 else { |
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70 return ""; |
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71 } |
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72 } |
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73 |
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74 |
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75 sub parse_long_name { |
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76 my ( $self, $parameter ) = @_; |
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77 if ( index( $parameter, '|' ) > -1 ) { |
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78 return substr( $parameter, 0, index( $parameter, '|' ) ); |
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79 } |
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80 else { |
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81 return $parameter; |
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82 } |
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83 } |
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84 |
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85 |
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86 sub _coerce0 { |
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87 my ($self) = @_; |
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88 require CPT::Parameter::Empty; |
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89 my $p = CPT::Parameter::Empty->new(); |
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90 return $p; |
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91 } |
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92 sub _coerce1 { |
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93 my ($self, @parts) = @_; |
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94 require CPT::Parameter::Label; |
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95 my $p = CPT::Parameter::Label->new(label=> $parts[0]); |
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96 return $p; |
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97 } |
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98 sub _coerce2 { |
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99 my ($self, @parts) = @_; |
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100 require CPT::Parameter::Flag; |
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101 my $p = CPT::Parameter::Flag->new( |
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102 name => $self->parse_long_name( $parts[0] ), |
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103 short => $self->parse_short_name( $parts[0] ), |
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104 multiple => 0, |
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105 description => $parts[1], |
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106 ); |
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107 return $p; |
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108 } |
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109 sub _coerce3 { |
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110 my ($self, @parts) = @_; |
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111 # Three parameter case |
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112 my %attr = ( |
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113 name => $self->parse_long_name( $parts[0] ), |
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114 short => $self->parse_short_name( $parts[0] ), |
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115 multiple => 0, |
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116 description => $parts[1], |
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117 ); |
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118 |
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119 # create the attr |
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120 my %set_attr = %{ $parts[2] }; |
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121 |
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122 # Check if various things are set, if so, copy them. |
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123 foreach (qw(default options required hidden implies multiple _show_in_galaxy _galaxy_specific data_format default_format file_format)) { |
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124 if ( defined $set_attr{$_} ) { |
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125 $attr{$_} = $set_attr{$_}; |
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126 } |
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127 } |
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128 |
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129 # Now, if validate is set, we can choose a type and possibly do other coersion. |
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130 if ( $set_attr{'validate'} ) { |
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131 my $validate = $set_attr{'validate'}; |
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132 my $p; |
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133 if ( $validate eq 'Flag' ) { |
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134 require CPT::Parameter::Flag; |
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135 $p = CPT::Parameter::Flag->new(%attr); |
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136 } |
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137 elsif ( $validate eq 'Float' ) { |
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138 foreach (qw(min max)) { |
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139 if ( $set_attr{$_} ) { |
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140 $attr{$_} = $set_attr{$_}; |
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141 } |
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142 } |
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143 require CPT::Parameter::Float; |
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144 $p = CPT::Parameter::Float->new(%attr); |
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145 } |
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146 elsif ( $validate eq 'Int' ) { |
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147 foreach (qw(min max)) { |
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148 if ( $set_attr{$_} ) { |
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149 $attr{$_} = $set_attr{$_}; |
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150 } |
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151 } |
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152 require CPT::Parameter::Int; |
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153 $p = CPT::Parameter::Int->new(%attr); |
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154 } |
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155 elsif ( $validate eq 'Option' ) { |
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156 foreach (qw(options)) { |
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157 if ( $set_attr{$_} ) { |
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158 $attr{$_} = $set_attr{$_}; |
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159 } |
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160 } |
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161 require CPT::Parameter::Option::Generic; |
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162 $p = CPT::Parameter::Option::Generic->new(%attr); |
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163 } |
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164 elsif ( $validate eq 'String' ) { |
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165 require CPT::Parameter::String; |
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166 $p = CPT::Parameter::String->new(%attr); |
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167 } |
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168 elsif ( $validate eq 'File/Input' ) { |
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169 require CPT::Parameter::File::Input; |
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170 $p = CPT::Parameter::File::Input->new(%attr); |
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171 } |
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172 elsif ( $validate eq 'File/Output' ) { |
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173 require CPT::Parameter::File::Output; |
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174 $p = CPT::Parameter::File::Output->new(%attr); |
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175 } |
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176 elsif ( $validate eq 'File/OutputFormat' ) { |
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177 require CPT::Parameter::File::OutputFormat; |
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178 $p = CPT::Parameter::File::OutputFormat->new(%attr); |
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179 } |
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180 elsif ( $validate eq 'Genomic/Tag' ) { |
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181 require CPT::Parameter::Option::Genomic_Tag; |
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182 $p = CPT::Parameter::Option::Genomic_Tag->new(%attr); |
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183 } |
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184 else { |
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185 die 'Unknown validation type: ' . $validate; |
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186 } |
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187 return $p; |
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188 } |
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189 else { |
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190 require CPT::Parameter::Flag; |
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191 my $p = CPT::Parameter::Flag->new(%attr); |
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192 return $p; |
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193 } |
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194 } |
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195 |
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196 sub _coerce_param { |
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197 my ( $self, $param ) = @_; |
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198 if ( ref($param) eq 'ARRAY' ) { |
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199 my @parts = @{$param}; |
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200 if ( scalar @parts == 0 ) { |
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201 return $self->_coerce0(@parts); |
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202 } |
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203 elsif ( scalar @parts == 1 ) { |
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204 return $self->_coerce1(@parts); |
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205 } |
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206 elsif ( scalar @parts == 2 ) { |
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207 return $self->_coerce2(@parts); |
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208 } |
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209 else { |
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210 return $self->_coerce3(@parts); |
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211 } |
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212 } |
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213 else { |
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214 die 'A non-array type was attempted to be coerced...'; |
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215 } |
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216 } |
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217 |
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218 |
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219 sub get_by_name { |
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220 my ( $self, $name ) = @_; |
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221 for my $item ( @{ $self->params() } ) { |
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222 if ( defined $item->name() && $item->name() eq $name ) { |
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223 return $item; |
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224 } |
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225 } |
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226 return; |
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227 } |
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228 |
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229 |
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230 sub getopt { |
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231 my ($self) = @_; |
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232 my @clean_opt_spec; |
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233 |
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234 # Loop through each item |
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235 for my $item ( @{ $self->params() } ) { |
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236 my $type = ref($item); |
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237 |
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238 # If it's an array, that means it's definitely an old style |
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239 if ( $type eq 'ARRAY' ) { |
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240 |
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241 # And we can push it through without any issues |
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242 push( @clean_opt_spec, $item ); |
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243 } |
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244 |
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245 # If it's a hash, it's probably one of the { one_of/xor/etc } |
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246 elsif ( $type eq 'CPT::ParameterGroup' ) { |
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247 |
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248 # D: |
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249 push( @clean_opt_spec, $item->flattenOptionsArray() ); |
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250 } |
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251 |
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252 # Otherwise it's one of our CPT::Parameter stuff |
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253 else { |
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254 |
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255 # Otherwise, we'll use the method to transform our complex object into a GetOpt compatible item |
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256 push( @clean_opt_spec, $item->getOptionsArray() ); |
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257 } |
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258 } |
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259 return @clean_opt_spec; |
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260 } |
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261 |
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262 |
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263 sub populate_from_getopt { |
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264 my ( $self, $opt ) = @_; |
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265 # Loop through each item |
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266 for my $item ( @{ $self->params() } ) { |
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267 # If it's has a name, and options supplies a value for that name |
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268 if ( defined($item->name()) && defined ($opt->{$item->name()})){ |
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269 $item->value($opt->{ $item->name() }); |
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270 } |
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271 } |
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272 } |
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273 |
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274 no Moose; |
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275 1; |
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276 |
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277 __END__ |
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278 |
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279 =pod |
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280 |
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281 =encoding UTF-8 |
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282 |
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283 =head1 NAME |
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284 |
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285 CPT::ParameterCollection |
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286 |
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287 =head1 VERSION |
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288 |
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289 version 1.99.4 |
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290 |
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291 =head2 validate |
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292 |
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293 $pC->validate(); |
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294 |
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295 calls the validate method, which loops through and checks that user values line |
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296 up with the validate method in each and every slot. |
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297 |
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298 =head2 push_group |
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299 |
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300 $pC->push_group(CPT::Parameter::Flag->new( <snip> )); |
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301 |
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302 Push a new groupeter onto the array |
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303 |
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304 =head2 push_param |
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305 |
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306 $pC->push_param(CPT::Parameter::Flag->new( <snip> )); |
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307 |
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308 Push a new parameter onto the array |
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309 |
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310 =head2 push_params |
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311 |
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312 $pC->push_param([ |
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313 <snip some params> |
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314 ]); |
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315 |
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316 Pushes a lot of params at once onto the array |
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317 |
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318 =head2 parse_short_name |
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319 |
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320 $pc->parse_short_name("file|f"); |
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321 # would return "f" |
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322 |
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323 =head2 parse_long_name |
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324 |
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325 $pc->parse_long_name("file|f"); |
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326 # would return "file" |
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327 |
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328 =head2 _coerce_param |
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329 |
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330 $pc->_coerce_param(["file|f","input file",{validate=>'File/Input'}]); |
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331 |
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332 would return a CPT::Parameter::File::Input object. |
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333 |
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334 =head2 get_by_name |
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335 |
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336 $pC->get_by_name('format'); |
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337 |
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338 returns the CPT::Parameter object with that key. |
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339 |
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340 =head2 getopt |
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341 |
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342 my @getopt_compatible_array = $pC->getopt() |
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343 |
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344 Returns a getopt compatible array by looping through the array and simply returning array objects, and calling the getOptionsArray method on CPT::Parameter::* objects |
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345 |
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346 =head2 populate_from_getopt |
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347 |
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348 $parameterCollection->populate_from_getopt($opt); |
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349 |
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350 Populate the ->value() from getopt. |
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351 |
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352 =head1 AUTHOR |
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353 |
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354 Eric Rasche <rasche.eric@yandex.ru> |
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355 |
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356 =head1 COPYRIGHT AND LICENSE |
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357 |
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358 This software is Copyright (c) 2014 by Eric Rasche. |
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359 |
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360 This is free software, licensed under: |
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361 |
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362 The GNU General Public License, Version 3, June 2007 |
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363 |
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364 =cut |