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view lib/CPT/Parameter/Option/Genomic_Tag.pm @ 1:f093e08f21f3 draft default tip
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author | cpt |
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date | Mon, 05 Jun 2023 02:47:24 +0000 |
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package CPT::Parameter::Option::Genomic_Tag; use Moose; with 'CPT::Parameter::Option'; my @validKeys = ( "-10_signal", "-35_signal", "3'UTR", "5'UTR", "CAAT_signal", "CDS", "C_region", "D-loop", "D_segment", "GC_signal", "J_segment", "LTR", "N_region", "RBS", "STS", "S_region", "TATA_signal", "V_region", "V_segment", "assembly_gap", "attenuator", "enhancer", "exon", "gap", "gene", "iDNA", "intron", "mRNA", "mat_peptide", "misc_RNA", "misc_binding", "misc_difference", "misc_feature", "misc_recomb", "misc_signal", "misc_structure", "mobile_element", "modified_base", "ncRNA", "old_sequence", "operon", "oriT", "polyA_signal", "polyA_site", "precursor_RNA", "prim_transcript", "primer_bind", "promoter", "protein_bind", "rRNA", "rep_origin", "repeat_region", "sig_peptide", "source", "stem_loop", "tRNA", "terminator", "tmRNA", "transit_peptide", "unsure", "variation", "whole", "all" ); my %validKeySet = map { $_ => $_ } @validKeys; has 'options' => ( is => 'rw', isa => 'HashRef', default => sub { \%validKeySet } ); sub getopt_format { return '=s'; } no Moose; 1; __END__ =pod =encoding UTF-8 =head1 NAME CPT::Parameter::Option::Genomic_Tag =head1 VERSION version 1.99.4 =head2 getopt_format Returns the format character for a given CPT::Parameter::* type =head1 AUTHOR Eric Rasche <rasche.eric@yandex.ru> =head1 COPYRIGHT AND LICENSE This software is Copyright (c) 2014 by Eric Rasche. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 =cut