Mercurial > repos > cpt > cpt_psm_plotter

annotate lib/CPT/GenerateTests.pm @ 1:8691c1c61a8e draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:48:47 +0000
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1
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1 package CPT::GenerateTests;
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2 use Moose;
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3 use strict;
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4 use warnings;
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5 use autodie;
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6
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7
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8 sub gen {
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9 my ( $self, @tests ) = @_;
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10
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11 my $test_count = 0;
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12
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13 # Header
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14 my @outtext = (
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15 '#!/usr/bin/env perl',
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16 'use strict;',
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17 'use warnings;',
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18 'use Test::More tests => 0;',
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19 'use IPC::Run3 qw(run3);',
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20 '',
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21 'my ( @base, @cmd, $in, $out, $err );',
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22 '',
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23 sprintf("%s = ('perl', '%s');", '@base', $0),
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24 'my %result_files = (',
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25 );
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26 my %test_names;
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27 # Loop across tests
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28 foreach my $test_ref(@tests){
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29 my %test = %{$test_ref};
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30 my %params = %{$test{params}};
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31 my $command_line = "";
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32 foreach(sort(keys(%params))){
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33 $command_line .= "--$_ $params{$_} ";
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34 }
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35 my %outputs = %{$test{outputs}};
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36
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37 $test_names{$test{test_name}}++;
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38 if($test_names{$test{test_name}} > 1){
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39 printf STDERR "Duplicate test found: %s. This will cause fewer tests to be run than expected\n", $test{test_name};
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40 }
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41 push(@outtext, sprintf(' "%s" => {', $test{test_name}));
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42 push(@outtext, sprintf(' command_line => "%s",', $command_line));
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43 push(@outtext, ' outputs => {');
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44
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45 foreach my $key(keys %outputs){
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46 push(@outtext, sprintf(' "%s" => ["%s", "%s"],', $key, @{$outputs{$key}}));
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47 # Add another test
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48 $test_count++;
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49 $test_count++;
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50 }
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51 push(@outtext, ' },');
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52 push(@outtext, ' },');
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53 };
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54 push(@outtext, ');');
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55 push(@outtext,'');
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56
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57 push(@outtext, 'foreach ( keys(%result_files) ) {');
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58 push(@outtext, ' # run with the command line');
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59 push(@outtext, ' my @cmd1 = ( @base, split( / /, $result_files{$_}{command_line} ) );');
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60 push(@outtext, ' run3 \@cmd1, \$in, \$out, \$err;');
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61 push(@outtext, ' if($err){ print STDERR "Exec STDERR: $err"; }');
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62 push(@outtext, ' if($out){ print STDERR "Exec STDOUT $out"; }');
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63 push(@outtext, ' # and now compare files');
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64 push(@outtext, ' foreach my $file_cmp ( keys( %{$result_files{$_}{outputs}} ) ) {');
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65 push(@outtext, ' my ($gen, $static) = @{$result_files{$_}{outputs}{$file_cmp}};');
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66 push(@outtext, ' my @diff = ( "diff", $gen, $static );');
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67 push(@outtext, ' my ($in_g, $out_g, $err_g);');
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68 push(@outtext, ' run3 \@diff, \$in_g, \$out_g, \$err_g;');
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69 push(@outtext, ' if($err_g) { print STDERR "err_g $err_g\n"; }');
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70 push(@outtext, ' if($out_g) { print STDOUT "out_g $out_g\n"; }');
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71 push(@outtext, ' chomp $out_g;');
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72 push(@outtext, ' is( -e $gen, 1, "[$_] Output file must exist"); ');
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73 push(@outtext, ' is( length($out_g), 0, "[$_] Checking validity of output \'$file_cmp\'" );');
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74 push(@outtext, ' unlink $gen;');
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75 push(@outtext, ' }');
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76 push(@outtext, '}');
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77
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78 # Update test counts
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79 $outtext[3] = "use Test::More tests => $test_count;";
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80 if($test_count == 0){
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81 return $self->gen_empty();
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82 }
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83
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84 return join("\n", @outtext);
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85 }
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86
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87 sub gen_empty {
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88 my ( $self ) = @_;
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89
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90 my $test_count = 0;
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91
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92 my @outtext = (
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93 '#!/usr/bin/env perl',
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94 'use strict;',
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95 'use warnings;',
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96 'use Test::More skip_all => "No tests defined for ' . $0 .'"',
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97 );
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98 return join("\n", @outtext);
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99 }
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100
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101
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102 no Moose;
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103 1;
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104
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105 __END__
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106
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107 =pod
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108
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109 =encoding UTF-8
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110
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111 =head1 NAME
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112
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113 CPT::GenerateTests
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114
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115 =head1 VERSION
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116
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117 version 1.99.4
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118
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119 =head2 gen
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120
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121 require CPT::GenerateTests;
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122 my $tgen = CPT::GenerateTests->new();
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123 $tgen->gen(
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124 {
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125 test_name => "Default",
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126 params => {
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127 'file' => 't/test-files/aa.gbk',
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128 'chromosome' => 'test',
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129 'color' => 'red',
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130 'intensity' => 'vvvvl',
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131 },
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132 outputs => {
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133 'result_name' => ['circos_k.txt', 'test-data/circos_k.txt'],
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134 }
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135 },
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136 );
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137 exit 1;
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138
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139 =head1 AUTHOR
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140
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141 Eric Rasche <rasche.eric@yandex.ru>
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142
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143 =head1 COPYRIGHT AND LICENSE
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144
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145 This software is Copyright (c) 2014 by Eric Rasche.
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146
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147 This is free software, licensed under:
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148
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149 The GNU General Public License, Version 3, June 2007
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150
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151 =cut