Mercurial > repos > cpt > cpt_psm_plotter
annotate lib/CPT/Writer.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
| author | cpt | 
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| date | Mon, 05 Jun 2023 02:48:47 +0000 | 
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| rev | line source | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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1 package CPT::Writer; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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2 use Moose::Role; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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3 use strict; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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4 use warnings; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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5 use autodie; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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6 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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7 requires 'process'; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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8 requires 'suffix'; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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9 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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10 # One or the other of these will be set. *ought* to be in accordance w/ galaxy_override | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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11 has 'OutputFilesClass' => ( is => 'rw' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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12 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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13 # This parameter specifies that we should behave according to galaxy_override spec. | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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14 has 'galaxy_override' => ( is => 'rw', isa => 'Bool' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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15 has 'title' => ( is => 'rw', isa => 'Str' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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16 has 'author' => ( is => 'rw', isa => 'Str' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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17 has 'data' => ( is => 'rw' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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18 has 'processed_data' => ( is => 'rw' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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19 has 'processing_complete' => ( is => 'rw', isa => 'Bool' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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20 # What file names were generated during the writing process | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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21 has 'used_filenames' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] }); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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22 # An optional, hinted at name. Otherwise we'll generate one. | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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23 has 'name' => ( is => 'rw', isa => 'Str' ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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24 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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25 sub write { | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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26 my ($self) = @_; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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27 if ( $self->processing_complete ) { | 
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28 $self->OutputFilesClass->extension( $self->suffix() ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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29 my $next_output_file = $self->OutputFilesClass->get_next_file(); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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30 # Store the name of the file we used | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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31 push(@{$self->used_filenames()}, $next_output_file); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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32 # Write data out | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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33 open(my $outfile, '>', $next_output_file ); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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34 print $outfile $self->processed_data; # given that processed_data is a string... | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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35 close($outfile); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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36 } | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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37 else { | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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38 warn "Write called but processing was not marked as complete. Not writing"; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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39 } | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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40 } | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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41 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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42 sub get_name { | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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43 my ($self) = @_; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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44 #return $self->OutputFilesClass->get_next_file(); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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45 return $self->OutputFilesClass->_get_filename(); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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46 } | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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47 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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48 sub process_data { | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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49 my ($self) = @_; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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50 if (!defined $self->data ) { | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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51 #confess "No data to process."; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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52 } | 
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53 $self->process(); | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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54 } | 
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55 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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56 no Moose::Role; | 
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57 1; | 
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58 | 
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59 __END__ | 
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60 | 
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61 =pod | 
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62 | 
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63 =encoding UTF-8 | 
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64 | 
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65 =head1 NAME | 
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66 | 
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67 CPT::Writer | 
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68 | 
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69 =head1 VERSION | 
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70 | 
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71 version 1.99.4 | 
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72 | 
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73 =head1 AUTHOR | 
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74 | 
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75 Eric Rasche <rasche.eric@yandex.ru> | 
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76 | 
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77 =head1 COPYRIGHT AND LICENSE | 
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78 | 
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79 This software is Copyright (c) 2014 by Eric Rasche. | 
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80 | 
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81 This is free software, licensed under: | 
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82 | 
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83 The GNU General Public License, Version 3, June 2007 | 
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84 | 
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85 =cut | 
