Mercurial > repos > cpt > cpt_psm_plotter
annotate lib/CPT/Parameter/File/OutputFormat.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
---|---|
date | Mon, 05 Jun 2023 02:48:47 +0000 |
parents | |
children |
rev | line source |
---|---|
1
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
1 package CPT::Parameter::File::OutputFormat; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
2 use Moose; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
3 with 'CPT::Parameter'; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
4 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
5 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
6 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
7 sub galaxy_input { |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
8 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
9 # Required by our parent. For an output file, this is non-functional |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
10 my ( $self, $xml_writer ) = @_; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
11 } |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
12 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
13 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
14 sub galaxy_output { |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
15 my ( $self, $xml_writer ) = @_; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
16 } |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
17 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
18 sub validate_individual { |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
19 my ($self, $val) = @_; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
20 return 1; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
21 } |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
22 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
23 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
24 sub getopt_format { |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
25 return '=s'; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
26 } |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
27 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
28 no Moose; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
29 1; |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
30 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
31 __END__ |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
32 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
33 =pod |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
34 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
35 =encoding UTF-8 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
36 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
37 =head1 NAME |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
38 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
39 CPT::Parameter::File::OutputFormat |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
40 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
41 =head1 VERSION |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
42 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
43 version 1.99.4 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
44 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
45 =head2 galaxy_input |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
46 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
47 $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::* |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
48 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
49 Utilises the $xml_writer to add a <data> block in the <output> section |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
50 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
51 =head2 galaxy_output |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
52 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
53 $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::* |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
54 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
55 Utilises the $xml_writer to add a <data> block in the <output> section |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
56 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
57 =head2 getopt_format |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
58 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
59 Returns the format character for a given CPT::Parameter::* type |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
60 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
61 =head1 AUTHOR |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
62 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
63 Eric Rasche <rasche.eric@yandex.ru> |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
64 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
65 =head1 COPYRIGHT AND LICENSE |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
66 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
67 This software is Copyright (c) 2014 by Eric Rasche. |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
68 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
69 This is free software, licensed under: |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
70 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
71 The GNU General Public License, Version 3, June 2007 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
72 |
8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
cpt
parents:
diff
changeset
|
73 =cut |