Mercurial > repos > cpt > cpt_psm_plotter
comparison lib/CPT/Parameter/Option/Genomic_Tag.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:48:47 +0000 |
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1 package CPT::Parameter::Option::Genomic_Tag; | |
2 use Moose; | |
3 with 'CPT::Parameter::Option'; | |
4 | |
5 my @validKeys = ( "-10_signal", "-35_signal", "3'UTR", "5'UTR", "CAAT_signal", "CDS", "C_region", "D-loop", "D_segment", "GC_signal", "J_segment", "LTR", "N_region", "RBS", "STS", "S_region", "TATA_signal", "V_region", "V_segment", "assembly_gap", "attenuator", "enhancer", "exon", "gap", "gene", "iDNA", "intron", "mRNA", "mat_peptide", "misc_RNA", "misc_binding", "misc_difference", "misc_feature", "misc_recomb", "misc_signal", "misc_structure", "mobile_element", "modified_base", "ncRNA", "old_sequence", "operon", "oriT", "polyA_signal", "polyA_site", "precursor_RNA", "prim_transcript", "primer_bind", "promoter", "protein_bind", "rRNA", "rep_origin", "repeat_region", "sig_peptide", "source", "stem_loop", "tRNA", "terminator", "tmRNA", "transit_peptide", "unsure", "variation", "whole", "all" ); | |
6 my %validKeySet = map { $_ => $_ } @validKeys; | |
7 | |
8 has 'options' => ( is => 'rw', isa => 'HashRef', default => sub { \%validKeySet } ); | |
9 | |
10 | |
11 sub getopt_format { | |
12 return '=s'; | |
13 } | |
14 | |
15 no Moose; | |
16 1; | |
17 | |
18 __END__ | |
19 | |
20 =pod | |
21 | |
22 =encoding UTF-8 | |
23 | |
24 =head1 NAME | |
25 | |
26 CPT::Parameter::Option::Genomic_Tag | |
27 | |
28 =head1 VERSION | |
29 | |
30 version 1.99.4 | |
31 | |
32 =head2 getopt_format | |
33 | |
34 Returns the format character for a given CPT::Parameter::* type | |
35 | |
36 =head1 AUTHOR | |
37 | |
38 Eric Rasche <rasche.eric@yandex.ru> | |
39 | |
40 =head1 COPYRIGHT AND LICENSE | |
41 | |
42 This software is Copyright (c) 2014 by Eric Rasche. | |
43 | |
44 This is free software, licensed under: | |
45 | |
46 The GNU General Public License, Version 3, June 2007 | |
47 | |
48 =cut |