diff lib/CPT/Bio/DataSource/GenBank.pm @ 1:8691c1c61a8e draft default tip

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:48:47 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lib/CPT/Bio/DataSource/GenBank.pm	Mon Jun 05 02:48:47 2023 +0000
@@ -0,0 +1,55 @@
+package CPT::Bio::DataSource::GenBank;
+no warnings;
+use Moose;
+with 'CPT::Bio::DataSource';
+
+has 'file' => ( is => 'rw', isa => 'Str' );
+
+
+sub getSeqIO {
+	my ($self) = @_;
+	use Bio::SeqIO;
+	my $seqio = Bio::SeqIO->new(
+		-file   => $self->file(),
+		-format => 'GenBank',
+	);
+	my @results;
+	return $seqio;
+}
+
+no Moose;
+1;
+
+__END__
+
+=pod
+
+=encoding UTF-8
+
+=head1 NAME
+
+CPT::Bio::DataSource::GenBank
+
+=head1 VERSION
+
+version 1.99.4
+
+=head2 getSeqIO
+
+	$gbk_ds->getSeqIO();
+
+supposed to return a genabnk DS. Not tested.
+
+=head1 AUTHOR
+
+Eric Rasche <rasche.eric@yandex.ru>
+
+=head1 COPYRIGHT AND LICENSE
+
+This software is Copyright (c) 2014 by Eric Rasche.
+
+This is free software, licensed under:
+
+  The GNU General Public License, Version 3, June 2007
+
+=cut