diff lib/CPT/Plot/Class.pm @ 1:8691c1c61a8e draft default tip

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:48:47 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lib/CPT/Plot/Class.pm	Mon Jun 05 02:48:47 2023 +0000
@@ -0,0 +1,70 @@
+package CPT::Plot::Class;
+use Moose;
+use Data::Dumper;
+
+# ABSTRACT: Class of objects for use in a genome map
+#
+has 'objects' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] } );
+
+# Should this class be used in calculation of partitions
+has 'included' => ( is => 'rw', isa => 'Bool' );
+
+has 'key'    => ( is => 'rw', isa => 'Str' );
+has 'color'  => ( is => 'rw', isa => 'Str' );
+has 'border' => ( is => 'rw', isa => 'Str' );
+has 'plot'   => ( is => 'rw', isa => 'Bool' );
+
+sub addObject {
+	my ( $self, $object ) = @_;
+	push( @{ $self->objects() }, $object );
+}
+
+sub getItemList {
+	my ($self) = @_;
+	my @items;
+	foreach ( @{ $self->objects() } ) {
+		push( @items, $_->getLocations() );
+	}
+	return \@items;
+}
+
+sub getObjects {
+	my ($self) = @_;
+	return $self->objects();
+}
+
+sub getMemberCount {
+	my ($self) = @_;
+	return scalar @{ $self->objects() };
+}
+
+no Moose;
+1;
+
+__END__
+
+=pod
+
+=encoding UTF-8
+
+=head1 NAME
+
+CPT::Plot::Class - Class of objects for use in a genome map
+
+=head1 VERSION
+
+version 1.96
+
+=head1 AUTHOR
+
+Eric Rasche <rasche.eric@yandex.ru>
+
+=head1 COPYRIGHT AND LICENSE
+
+This software is Copyright (c) 2014 by Eric Rasche.
+
+This is free software, licensed under:
+
+  The GNU General Public License, Version 3, June 2007
+
+=cut