Mercurial > repos > cpt > cpt_psm_plotter
diff lib/CPT/Writer/TSV_U.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
---|---|
date | Mon, 05 Jun 2023 02:48:47 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/CPT/Writer/TSV_U.pm Mon Jun 05 02:48:47 2023 +0000 @@ -0,0 +1,110 @@ +package CPT::Writer::TSV_U; +no warnings; +use Moose; +with 'CPT::Writer'; + +sub process { + my ($self) = @_; + my %data = %{ $self->data }; + + my @sheets = keys %data; + my %complete_processed_data = map { $_ => "" } @sheets; + foreach (@sheets) { + my $tmp_data = ''; + my $data_struc_ref = $data{$_}; + $tmp_data .= + join( "\t", + map { local $_ = $_; s/"/\\"/g; $_ } + @{ ${$data_struc_ref}{'header'} } ) + . "\n"; + foreach ( @{ ${$data_struc_ref}{'data'} } ) { + $tmp_data .= join( + "\t", + map { + local $_ = $_; + unless (defined $_) { $_ = "" } + s/"/\\"/g; + $_; + } @{$_} + ) . "\n"; + } + $complete_processed_data{$_} = $tmp_data; + } + $self->processed_data( \%complete_processed_data ); + $self->processing_complete(1); +} + +sub write { + + # Wanted to use child's write method here so I can output multiple files. + my ($self) = @_; + if ( $self->processing_complete ) { + my %complete_processed_data = %{ $self->processed_data() }; + my @sheets = keys %complete_processed_data; + + # When this is initially called, the OutputFilesClass was given + # a hint as to what files from this analysis should be called. + # We'll borrow that and modify it each time before putting it + # back at the end. Since this is the *ONLY* type that has + # sub-reports, it feels O.K. to do it here. + my $base_name = $self->OutputFilesClass->given_filename(); + unless ($base_name) { $base_name = ""; } + foreach (@sheets) { + # We update the base filename to include our + # particular Sheet name. As such the generate function + # should start generating files with that as part of + # the name + $self->OutputFilesClass->given_filename( $base_name . '.' . $_ ); + $self->OutputFilesClass->extension('csv'); + my $next_output_file = + $self->OutputFilesClass->get_next_file(); + + # Store the filename we used + push(@{$self->used_filenames()}, $next_output_file); + open( my $outfile, '>', $next_output_file ); + print $outfile $complete_processed_data{$_}; + close($outfile); + } + # Reset it back to default (probably unnecessary) + $self->OutputFilesClass->given_filename($base_name); + } + else { + warn +"Write called but processing was not marked as complete. Not writing"; + } + +} + +sub suffix { + return 'csv'; +} +no Moose; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Writer::TSV_U + +=head1 VERSION + +version 1.99.4 + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut