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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:50:07 +0000
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1 package CPT::Bio::RBS;
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2 use Moose;
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3 use autodie;
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4
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5 has 'algo' => ( is => 'rw', isa => 'Str' );
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6 has 'predictor' => ( is => 'rw', isa => 'Any' );
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7 has 'only_best' => ( is => 'rw', isa => 'Bool', default => sub { 0 } );
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8
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9 sub set_algorithm {
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10 my ( $self, $algorithm ) = @_;
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11 if ( $algorithm eq 'naive' ) {
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12 use CPT::Bio::RBS::Algo::Naive;
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13 my $a = CPT::Bio::RBS::Algo::Naive->new();
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14 $self->predictor($a);
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15 }
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16 else {
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17 die 'Algorithm not implemented';
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18 }
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19 }
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20
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21 # Run the prediction on the sequence
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22 sub predict {
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23 my ( $self, $sequence ) = @_;
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24 return $self->predictor()->predict(
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25 sequence => lc($sequence),
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26 return_best => $self->only_best(),
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27 );
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28 }
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29
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30 no Moose;
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31 1;
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32
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33 __END__
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34
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35 =pod
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36
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37 =encoding UTF-8
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38
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39 =head1 NAME
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40
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41 CPT::Bio::RBS
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42
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43 =head1 VERSION
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44
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45 version 1.99.4
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46
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47 =head1 AUTHOR
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48
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49 Eric Rasche <rasche.eric@yandex.ru>
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50
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51 =head1 COPYRIGHT AND LICENSE
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52
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53 This software is Copyright (c) 2014 by Eric Rasche.
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54
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55 This is free software, licensed under:
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56
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57 The GNU General Public License, Version 3, June 2007
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58
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59 =cut