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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:50:07 +0000
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1 package CPT::Plot::Class;
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2 use Moose;
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3 use Data::Dumper;
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4
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5 # ABSTRACT: Class of objects for use in a genome map
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6 #
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7 has 'objects' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] } );
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8
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9 # Should this class be used in calculation of partitions
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10 has 'included' => ( is => 'rw', isa => 'Bool' );
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11
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12 has 'key' => ( is => 'rw', isa => 'Str' );
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13 has 'color' => ( is => 'rw', isa => 'Str' );
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14 has 'border' => ( is => 'rw', isa => 'Str' );
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15 has 'plot' => ( is => 'rw', isa => 'Bool' );
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16
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17 sub addObject {
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18 my ( $self, $object ) = @_;
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19 push( @{ $self->objects() }, $object );
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20 }
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21
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22 sub getItemList {
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23 my ($self) = @_;
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24 my @items;
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25 foreach ( @{ $self->objects() } ) {
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26 push( @items, $_->getLocations() );
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27 }
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28 return \@items;
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29 }
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30
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31 sub getObjects {
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32 my ($self) = @_;
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33 return $self->objects();
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34 }
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35
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36 sub getMemberCount {
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37 my ($self) = @_;
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38 return scalar @{ $self->objects() };
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39 }
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40
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41 no Moose;
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42 1;
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43
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44 __END__
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45
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46 =pod
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47
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48 =encoding UTF-8
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49
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50 =head1 NAME
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51
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52 CPT::Plot::Class - Class of objects for use in a genome map
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53
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54 =head1 VERSION
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55
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56 version 1.96
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57
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58 =head1 AUTHOR
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59
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60 Eric Rasche <rasche.eric@yandex.ru>
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61
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62 =head1 COPYRIGHT AND LICENSE
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63
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64 This software is Copyright (c) 2014 by Eric Rasche.
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65
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66 This is free software, licensed under:
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67
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68 The GNU General Public License, Version 3, June 2007
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69
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70 =cut