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comparison lib/CPT/Analysis/PAUSE/ParsedSam.pm @ 1:d724f34e671d draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:50:07 +0000
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0:e4de0a0e90c8 1:d724f34e671d
1 package CPT::Analysis::PAUSE::ParsedSam;
2
3 # ABSTRACT: Library for use in PAUSE analysis
4 use strict;
5 use warnings;
6 use Moose;
7 use SVG;
8
9 has 'coverage_density' => ( is => 'rw', isa => 'ArrayRef' );
10 has 'read_starts' => ( is => 'rw', isa => 'ArrayRef' );
11 has 'read_ends' => ( is => 'rw', isa => 'ArrayRef' );
12 has 'max' => ( is => 'rw', isa => 'Int' );
13 has 'stats_start_max' => ( is => 'rw', isa => 'Num' );
14 has 'stats_end_max' => ( is => 'rw', isa => 'Num' );
15 has 'stats_start_mean' => ( is => 'rw', isa => 'Num' );
16 has 'stats_end_mean' => ( is => 'rw', isa => 'Num' );
17 has 'stats_start_standard_deviation' => ( is => 'rw', isa => 'Num' );
18 has 'stats_end_standard_deviation' => ( is => 'rw', isa => 'Num' );
19
20 no Moose;
21 1;
22
23 __END__
24
25 =pod
26
27 =encoding UTF-8
28
29 =head1 NAME
30
31 CPT::Analysis::PAUSE::ParsedSam - Library for use in PAUSE analysis
32
33 =head1 VERSION
34
35 version 1.96
36
37 =head1 AUTHOR
38
39 Eric Rasche <rasche.eric@yandex.ru>
40
41 =head1 COPYRIGHT AND LICENSE
42
43 This software is Copyright (c) 2014 by Eric Rasche.
44
45 This is free software, licensed under:
46
47 The GNU General Public License, Version 3, June 2007
48
49 =cut